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LOCUS JN214928 1274 bp RNA linear VRL 07-DEC-2011
DEFINITION HIV-1 isolate 478-7420-2 from USA pol protein (pol) gene, partial
cds
ACCESSION JN214928
VERSION JN214928.1 GI:359302153
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1274)
Show all sequences for reference 1
AUTHORS Delwart,E., Slikas,E., Stramer,S.L., Kamel,H., Kessler,D.,
Krysztof,D., Tobler,L.H., Carrick,D.M., Steele,W., Todd,D.,
Wright,D.J., Kleinman,S.H. and Busch,M.P.
TITLE Genetic Diversity of Recently Acquired and Prevalent HIV, Hepatitis
B Virus, and Hepatitis C Virus Infections in US Blood Donors.
JOURNAL J. Infect. Dis.. 205(6); 875-885 (2012)
PUBMED 22293432
REFERENCE 2 (bases 1 to 1274)
Show all sequences for reference 2
AUTHORS Slikas,E. and Delwart,E.
TITLE Direct Submission
JOURNAL Submitted (05-JUL-2011) Health Studies, Westat, 1500 Research Blvd,
Rockville, MD 20850, USA
FEATURES Location/Qualifiers
source 1..1274
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="478-7420-2"
/host="Homo sapiens; first time blood donor; age: 58;
race/ethnicity: not available; prevalent HIV infection"
/db_xref="taxon:11676"
/country="USA: other"
/collection_date="2006"
/PCR_primers="fwd_name: maw-26, fwd_seq:
ttggaaatgtggaaaggaaggac, fwd_name: pro-1, fwd_seq:
cagagccaacagccccacca, rev_name: rt21, rev_seq:
ctgtatttctgctattaagtcttttgatggg, rev_name: rt20, rev_seq:
ctgccagttctagctctgcttc"
/note="subtype: B"
gene <1..>1274
/gene="pol"
CDS <1..>1274
/gene="pol"
/note="drug resistant protease mutation: none; drug
resistant RT mutation none; may contain reverse
transcriptase, protease, and polymerase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEV22716.1"
/db_xref="GI:359302154"
/translation="RELQVWGRDNNSPSEAGADRQGTVSFSLPQITLWQRPLVSVKIG
GQLKEALLDTGADDTVLEEINLPGRWKPKMIGGIGGFIKVKQYDQVPIEICGHKAIGT
VLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKA
LTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKKTQDFWEVQ
LGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVL
PQGWKGSPAIFQCSMTKILEPFRKQNPNLVIYQYMDDLYVGSDLEIGQHRTKIEELRQ
HLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLN
WASQIYSGIKVKQLCRLLRGAKSLTEVVPLTK"
BASE COUNT 490 a 219 c 269 g 296 t
ORIGIN
1 gaagagagct tcaggtttgg gggagagata acaactcccc ctcagaagca ggagccgata
61 gacaaggaac tgtatccttt agcctccctc aaatcactct ttggcaacga cccctcgtct
121 cagtaaagat aggggggcaa ctaaaggaag ctctattaga tacaggagca gatgatacag
181 tattagaaga aataaatttg ccaggaagat ggaagccaaa aatgataggg ggaattggag
241 gttttattaa agtaaaacag tatgatcagg tacccataga aatctgtgga cataaagcta
301 taggtacagt attagtagga cctacacctg tcaacataat tggaagaaat ctgttgactc
361 aaattggttg cactttaaat tttcccatta gtcctattga aactgtacca gtaaaattaa
421 agccaggaat ggatggccca aaagttaaac aatggccatt gacagaagaa aaaataaaag
481 cattaacaga aatctgtaca gaaatggaaa aggaaggaaa gatctcaaaa attgggcctg
541 aaaatccata caatactcca gtatttgcca taaagaaaaa agatagtact aaatggcgaa
601 aattagtaga tttcagagaa cttaataaga aaactcaaga cttctgggaa gttcaactag
661 gaataccaca tcccgcaggg ttaaaaaaga aaaaatcagt aacagtactg gatgtgggtg
721 atgcatattt ttcagttccc ttagataagg aattcaggaa gtatactgca tttaccatac
781 ctagtataaa taatgagaca ccagggatta gatatcagta caatgtgctt ccacagggat
841 ggaaaggatc accagcaata ttccaatgta gcatgacaaa aatcttagag cctttcagaa
901 aacagaatcc aaacctagtt atctatcaat acatggatga tttgtatgta ggatctgact
961 tagaaatagg gcagcataga acaaaaatag aagagctgag acaacatctg ttgaagtggg
1021 gatttaccac accagacaaa aaacatcaga aagaacctcc atttctttgg atgggttatg
1081 aactccatcc tgataaatgg acagtacagc ctatagtgct gccagaaaaa gacagctgga
1141 ctgtcaatga catacagaag ttagtgggaa aattgaattg ggcaagtcaa atttactcag
1201 ggattaaagt aaagcagcta tgtagactcc ttaggggagc caagtcacta acagaagtag
1261 taccactaac aaaa
//
last modified: Tue May 31 10:56 2022