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LOCUS	    JN214928		    1274 bp    RNA     linear	VRL 07-DEC-2011
DEFINITION  HIV-1 isolate 478-7420-2 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JN214928
VERSION     JN214928.1 GI:359302153
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1274)
            Show all sequences for reference 1
  AUTHORS   Delwart,E., Slikas,E., Stramer,S.L., Kamel,H., Kessler,D.,
	    Krysztof,D., Tobler,L.H., Carrick,D.M., Steele,W., Todd,D.,
	    Wright,D.J., Kleinman,S.H. and Busch,M.P.
  TITLE     Genetic Diversity of Recently Acquired and Prevalent HIV, Hepatitis
	    B Virus, and Hepatitis C Virus Infections in US Blood Donors.
  JOURNAL   J. Infect. Dis.. 205(6); 875-885 (2012)
  PUBMED    22293432
REFERENCE   2 (bases 1 to 1274)
            Show all sequences for reference 2
  AUTHORS   Slikas,E. and Delwart,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUL-2011) Health Studies, Westat, 1500 Research Blvd,
	    Rockville, MD 20850, USA
FEATURES             Location/Qualifiers
     source	     1..1274
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="478-7420-2"
		     /host="Homo sapiens; first time blood donor; age: 58;
		     race/ethnicity: not available; prevalent HIV infection"
		     /db_xref="taxon:11676"
		     /country="USA: other"
		     /collection_date="2006"
		     /PCR_primers="fwd_name: maw-26, fwd_seq:
		     ttggaaatgtggaaaggaaggac, fwd_name: pro-1, fwd_seq:
		     cagagccaacagccccacca, rev_name: rt21, rev_seq:
		     ctgtatttctgctattaagtcttttgatggg, rev_name: rt20, rev_seq:
		     ctgccagttctagctctgcttc"
		     /note="subtype: B"
     gene	     <1..>1274
		     /gene="pol"
     CDS	     <1..>1274
		     /gene="pol"
		     /note="drug resistant protease mutation: none; drug
		     resistant RT mutation none; may contain reverse
		     transcriptase, protease, and polymerase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEV22716.1"
		     /db_xref="GI:359302154"
		     /translation="RELQVWGRDNNSPSEAGADRQGTVSFSLPQITLWQRPLVSVKIG
		     GQLKEALLDTGADDTVLEEINLPGRWKPKMIGGIGGFIKVKQYDQVPIEICGHKAIGT
		     VLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKA
		     LTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKKTQDFWEVQ
		     LGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVL
		     PQGWKGSPAIFQCSMTKILEPFRKQNPNLVIYQYMDDLYVGSDLEIGQHRTKIEELRQ
		     HLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLN
		     WASQIYSGIKVKQLCRLLRGAKSLTEVVPLTK"
BASE COUNT	490 a	 219 c	  269 g    296 t
ORIGIN
       1 gaagagagct tcaggtttgg gggagagata acaactcccc ctcagaagca ggagccgata 
      61 gacaaggaac tgtatccttt agcctccctc aaatcactct ttggcaacga cccctcgtct 
     121 cagtaaagat aggggggcaa ctaaaggaag ctctattaga tacaggagca gatgatacag 
     181 tattagaaga aataaatttg ccaggaagat ggaagccaaa aatgataggg ggaattggag 
     241 gttttattaa agtaaaacag tatgatcagg tacccataga aatctgtgga cataaagcta 
     301 taggtacagt attagtagga cctacacctg tcaacataat tggaagaaat ctgttgactc 
     361 aaattggttg cactttaaat tttcccatta gtcctattga aactgtacca gtaaaattaa 
     421 agccaggaat ggatggccca aaagttaaac aatggccatt gacagaagaa aaaataaaag 
     481 cattaacaga aatctgtaca gaaatggaaa aggaaggaaa gatctcaaaa attgggcctg 
     541 aaaatccata caatactcca gtatttgcca taaagaaaaa agatagtact aaatggcgaa 
     601 aattagtaga tttcagagaa cttaataaga aaactcaaga cttctgggaa gttcaactag 
     661 gaataccaca tcccgcaggg ttaaaaaaga aaaaatcagt aacagtactg gatgtgggtg 
     721 atgcatattt ttcagttccc ttagataagg aattcaggaa gtatactgca tttaccatac 
     781 ctagtataaa taatgagaca ccagggatta gatatcagta caatgtgctt ccacagggat 
     841 ggaaaggatc accagcaata ttccaatgta gcatgacaaa aatcttagag cctttcagaa 
     901 aacagaatcc aaacctagtt atctatcaat acatggatga tttgtatgta ggatctgact 
     961 tagaaatagg gcagcataga acaaaaatag aagagctgag acaacatctg ttgaagtggg 
    1021 gatttaccac accagacaaa aaacatcaga aagaacctcc atttctttgg atgggttatg 
    1081 aactccatcc tgataaatgg acagtacagc ctatagtgct gccagaaaaa gacagctgga 
    1141 ctgtcaatga catacagaag ttagtgggaa aattgaattg ggcaagtcaa atttactcag 
    1201 ggattaaagt aaagcagcta tgtagactcc ttaggggagc caagtcacta acagaagtag 
    1261 taccactaac aaaa
//
last modified: Tue May 31 10:56 2022


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