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LOCUS	    JN153195		     324 bp    DNA     linear	VRL 10-AUG-2011
DEFINITION  HIV-1 isolate E55MID12_CON_1476_15 from Uganda envelope
	    glycoprotein gene, partial cds
ACCESSION   JN153195
VERSION     JN153195.1 GI:342890964
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 324)
            Show all sequences for reference 1
  AUTHORS   Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
	    Mullis,C.E., Manucci,J., Tobian,A.A., Selig,E.J., Laeyendecker,O.,
	    Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J., Porcella,S.F.
	    and Quinn,T.C.
  TITLE     Identification of HIV Superinfection in Seroconcordant Couples in
	    Rakai, Uganda, by Use of Next-Generation Deep Sequencing
  JOURNAL   J. Clin. Microbiol. 49 (8), 2859-2867 (2011)
  PUBMED    21697329
REFERENCE   2 (bases 1 to 324)
            Show all sequences for reference 2
  AUTHORS   Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
	    Mullis,C.E., Manucci,J., Tobian,A.A.R., Selig,E.J.,
	    Laeyendecker,O., Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J.,
	    Porcella,S.F. and Quinn,T.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2011) School of Medicine, Johns Hopkins
	    University, Rangos Building, Room 530, 855 N Wolfe St, Baltimore,
	    MD 21205, USA
COMMENT     ##Assembly-Data-START## Assembly Method GS Amplicon Variant
	    Analyzer version 2.5 (Roche) Sequencing Technology 454
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..324
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="E55MID12_CON_1476_15"
		     /host="Homo sapiens; male"
		     /db_xref="taxon:11676"
		     /country="Uganda: Rakai"
		     /collection_date="2002"
		     /note="couple 1"
     CDS	     <1..>324
		     /note="gp41"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEL75303.1"
		     /db_xref="GI:342890965"
		     /translation="IKQLQTRILAVERYLRDQQLLGIWGCSGKLICTTAVPRNSSWSN
		     KSQNDIWDNMTWMQWDREISNYTDIIYRLLEDSQNQQEKNEEDLLALDRWQNLWSWFN
		     ITNWLW"
BASE COUNT	109 a	  55 c	   81 g     79 t
ORIGIN
       1 attaaacagc tccagacaag aatcctggct gtggaaagat acctaaggga tcaacagctc 
      61 ctagggattt ggggctgctc tggaaaactc atctgcacca ctgctgtgcc tcggaattct 
     121 agttggagta ataaatctca aaatgatatc tgggataaca tgacctggat gcagtgggat 
     181 agagaaatca gtaattatac agatataata tacaggttgc ttgaagactc gcagaaccag 
     241 caggaaaaga atgaagaaga tttactagca ttggacaggt ggcaaaatct gtggagttgg 
     301 tttaacataa caaattggct gtgg
//
last modified: Tue May 31 10:56 2022


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