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LOCUS JN153180 323 bp DNA linear VRL 10-AUG-2011
DEFINITION HIV-1 isolate E55MID12_CON_1486_22 from Uganda nonfunctional
envelope glycoprotein gene, partial sequence
ACCESSION JN153180
VERSION JN153180.1 GI:342890942
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 323)
Show all sequences for reference 1
AUTHORS Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
Mullis,C.E., Manucci,J., Tobian,A.A., Selig,E.J., Laeyendecker,O.,
Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J., Porcella,S.F.
and Quinn,T.C.
TITLE Identification of HIV Superinfection in Seroconcordant Couples in
Rakai, Uganda, by Use of Next-Generation Deep Sequencing
JOURNAL J. Clin. Microbiol. 49 (8), 2859-2867 (2011)
PUBMED 21697329
REFERENCE 2 (bases 1 to 323)
Show all sequences for reference 2
AUTHORS Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
Mullis,C.E., Manucci,J., Tobian,A.A.R., Selig,E.J.,
Laeyendecker,O., Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J.,
Porcella,S.F. and Quinn,T.C.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2011) School of Medicine, Johns Hopkins
University, Rangos Building, Room 530, 855 N Wolfe St, Baltimore,
MD 21205, USA
COMMENT ##Assembly-Data-START## Assembly Method GS Amplicon Variant
Analyzer version 2.5 (Roche) Sequencing Technology 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..323
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="E55MID12_CON_1486_22"
/host="Homo sapiens; male"
/db_xref="taxon:11676"
/country="Uganda: Rakai"
/collection_date="2002"
/note="couple 1"
misc_feature <1..>323
/note="nonfunctional envelope glycoprotein due to
mutation; gp41"
BASE COUNT 108 a 54 c 81 g 80 t
ORIGIN
1 attaaacagc tccagacaag aatcctggct gtggaaagat acctaaggga tcaacagctc
61 ctagggattt ggggctgctc tggaaaactc atctgcacca ctgctgtgcc ttggaattct
121 agttggagta ataaatctca aaatgatatc tgggataaca tgacctggat gcagtgggat
181 agagaaatca gtaattatac agatataata tacaggttgc ttgaagactc gcagaaccag
241 caggaaagaa tgaagaagat ttactagcat tggacaggtg gcaaaatctg tggagttggt
301 ttaacataac aaattggctg tgg
//
last modified: Tue May 31 10:56 2022