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LOCUS JN153175 324 bp DNA linear VRL 10-AUG-2011
DEFINITION HIV-1 isolate E55MID12_CON_283_25 from Uganda envelope glycoprotein
gene, partial cds
ACCESSION JN153175
VERSION JN153175.1 GI:342890933
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 324)
Show all sequences for reference 1
AUTHORS Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
Mullis,C.E., Manucci,J., Tobian,A.A., Selig,E.J., Laeyendecker,O.,
Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J., Porcella,S.F.
and Quinn,T.C.
TITLE Identification of HIV Superinfection in Seroconcordant Couples in
Rakai, Uganda, by Use of Next-Generation Deep Sequencing
JOURNAL J. Clin. Microbiol. 49 (8), 2859-2867 (2011)
PUBMED 21697329
REFERENCE 2 (bases 1 to 324)
Show all sequences for reference 2
AUTHORS Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
Mullis,C.E., Manucci,J., Tobian,A.A.R., Selig,E.J.,
Laeyendecker,O., Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J.,
Porcella,S.F. and Quinn,T.C.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2011) School of Medicine, Johns Hopkins
University, Rangos Building, Room 530, 855 N Wolfe St, Baltimore,
MD 21205, USA
COMMENT ##Assembly-Data-START## Assembly Method GS Amplicon Variant
Analyzer version 2.5 (Roche) Sequencing Technology 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..324
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="E55MID12_CON_283_25"
/host="Homo sapiens; male"
/db_xref="taxon:11676"
/country="Uganda: Rakai"
/collection_date="2002"
/note="couple 1"
CDS <1..>324
/note="gp41"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEL75292.1"
/db_xref="GI:342890934"
/translation="IKQLQTRILAVERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSN
KSQNDIWDNMTWMQWDREISNYTDIIYRLLEDSQNQQEKNEEDLLALDRWQNLWSWFN
ITNWLW"
BASE COUNT 109 a 55 c 81 g 79 t
ORIGIN
1 attaaacagc tccagacaag aatcctggct gtggaaagat acctaaggga tcaacagctc
61 ctagggattt ggggctgctc tggaaaactc atctgcacca ctgctgtgcc ctggaattct
121 agttggagta ataaatctca aaatgatatc tgggataaca tgacctggat gcagtgggat
181 agagaaatca gtaattatac agatataata tacaggttgc ttgaagactc gcagaaccag
241 caggaaaaga atgaagaaga tttactagca ttggacaggt ggcaaaatct gtggagttgg
301 tttaacataa caaattggct gtgg
//
last modified: Tue May 31 10:56 2022