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LOCUS	    JN091697		     728 bp    RNA     linear	VRL 12-AUG-2011
DEFINITION  Simian immunodeficiency virus isolate UG300 from Tanzania envelope
	    glycoprotein (env), rev protein (rev), tat protein (tat), and nef
	    protein (nef) genes, partial cds
ACCESSION   JN091697
VERSION     JN091697.1 GI:341571960
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 728)
            Show all sequences for reference 1
  AUTHORS   Rudicell,R.S., Piel,A.K., Stewart,F., Moore,D.L., Learn,G.H.,
	    Li,Y., Takehisa,J., Pintea,L., Shaw,G.M., Moore,J., Sharp,P.M. and
	    Hahn,B.H.
  TITLE     High prevalence of simian immunodeficiency virus infection in a
	    community of savanna chimpanzees.
  JOURNAL   J. Virol.. 85(19); 9918-28 (2011)
  PUBMED    21775446
REFERENCE   2 (bases 1 to 728)
            Show all sequences for reference 2
  AUTHORS   Rudicell,R.S., Piel,A.K., Stewart,F., Moore,D., Learn,G.H., Li,Y.,
	    Takehisa,J., Pintea,L., Moore,J., Sharp,P.M. and Hahn,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUN-2011) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th St. South, Birmingham, AL 35294,
	    USA
FEATURES             Location/Qualifiers
     source	     1..728
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="UG300"
		     /isolation_source="feces"
		     /host="Pan troglodytes schweinfurthii"
		     /db_xref="taxon:11723"
		     /country="Tanzania"
		     /collection_date="22-Feb-2010"
     gene	     <1..481
		     /gene="env"
     CDS	     <1..481
		     /gene="env"
		     /note="gp160"
		     /codon_start="2"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEK79619.1"
		     /db_xref="GI:341571961"
		     /translation="YMPLFSQIPTQAHQDPEQPEGTAGGGGGTGNVRWTPLHRGFFSV
		     VWEDLRTLLLWLYQTCQNFGWLLWTILKALRQGIISLTQRLIIVQRDIVLKSRQLFDW
		     LSNTYSILRTSLIQAIDRLANFTGWWTDLVIAGVIFVAQGIRNIPRRIRQGLEIALN"
     gene	     <23..285
		     /gene="rev"
     CDS	     <23..285
		     /gene="rev"
		     /note="Rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEK79620.1"
		     /db_xref="GI:341571962"
		     /translation="PYPSASGSRTARRNRRRRWRNRQRQVDSLAQRILQCRLGGPQDP
		     PPVALPDLSKLRLAPLDDSESTETGNNQPNTETHYSAERHST"
     gene	     <23..215
		     /gene="tat"
     CDS	     <23..215
		     /gene="tat"
		     /note="Tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AEK79621.1"
		     /db_xref="GI:341571963"
		     /translation="SLPKRIRIQNSQKEPPEEVEEQATSGGLPCTEDSSVSSGRTSGP
		     SSCGSTRPVKTSAGSSGRF"
     gene	     483..>728
		     /gene="nef"
     CDS	     483..>728
		     /gene="nef"
		     /note="Nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AEK79622.1"
		     /db_xref="GI:341571964"
		     /translation="MGNIFGKWPGAQRAIQQIHECNPEIKGQASQDLQARGGLTTSTL
		     GTSADVVNYSQDHSEEEVGFPVRPAVPMRPMTEKLAVD"
BASE COUNT	233 a	 167 c	  175 g    153 t
ORIGIN
       1 ttatatgccc ctgttttcac agatccctac ccaagcgcat caggatccag aacagccaga 
      61 aggaaccgcc ggaggaggtg gaggaacagg caacgtcagg tggactccct tgcacagagg 
     121 attcttcagt gtcgtctggg aggacctcag gaccctcctc ctgtggctct accagacctg 
     181 tcaaaacttc ggctggctcc tctggacgat tctgaaagca ctgagacagg gaataatcag 
     241 cctaacacag agactcatta tagtgcagag agacatagta cttaaaagta gacaactctt 
     301 tgactggctt agcaatacct atagtatctt aagaacctcg cttatacagg caatagatag 
     361 attagctaac ttcacaggct ggtggacgga cttggttata gcaggagtga tatttgtagc 
     421 tcaaggcatc agaaatatcc caagaagaat tagacagggc ctagaaatag ccttaaatta 
     481 acatgggaaa tatctttggc aagtggcctg gagcccaaag ggcaatccaa caaatacatg 
     541 aatgtaatcc tgaaataaaa gggcaagcat cacaggacct ccaggcaagg ggagggttaa 
     601 ctactagcac cctaggaaca tcagcagatg tagtaaatta ctctcaggac cactctgaag 
     661 aggaagtagg cttcccagtt aggccagcag tgccaatgag acccatgaca gaaaaactag 
     721 cagtagat
//
last modified: Tue May 31 10:56 2022


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