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LOCUS JN087533 1188 bp DNA linear VRL 30-OCT-2011
DEFINITION HIV-1 isolate A228 from South Africa pol protein (pol) and gag
protein (gag) genes, partial cds
ACCESSION JN087533
VERSION JN087533.1 GI:354334700
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1188)
Show all sequences for reference 1
AUTHORS van Zyl,G.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2011) Division of Medical Virology, University of
Stellenbosch and NHLS Tygerberg, Francie van Zijl Drive, Parow
7500, South Africa
REFERENCE 2
Show all sequences for reference 2
AUTHORS Zyl,G.U.v., Rabie,H., Nuttall,J.J. and Cotton,M.F.
TITLE It is time to consider third-line options in
antiretroviral-experienced paediatric patients?
JOURNAL J Int AIDS Soc. 2011 Nov 15;14:55. doi: 10.1186/1758-2652-14-55.
PUBMED 22085598
FEATURES Location/Qualifiers
source 1..1188
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A228"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2008"
/note="subtype: C"
gene <1..>1188
/gene="pol"
CDS <1..>1188
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AER23838.1"
/db_xref="GI:354334702"
/translation="EQTRANSPTSRELQVRGDNPHPEAGAEGRGTTLNFPQITLWQRP
VVSIKVGGQIREAILDTGADDTVLEDIXLPGKWKPKIIGGIGGFVKVRQYEXVXIEIC
GKKAIGTVVVGPTPMNIIGRNILTQIGCTLNFPISSIETVPVKLKPGMDGPKVKQWPL
TEEKIKALTAICEEMEKEGKITKIGPENPYNTPIFAIKKKNSTRWRKLVDFRELNKRT
QDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDENFRKYTAFTIPSINNETPGI
RYQYNVLPQGWKGSPAIFQASMTKILEPFRRQNPDIVIYQYMDDLYVGSDLEIGQHRA
KIEELREXLLKWGLFTPDEKHQKEPPFLWMGYELHPDRWTVQPIMLPEKDSWTVNDIQ
KLVG"
gene <1..145
/gene="gag"
CDS <1..145
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AER23837.1"
/db_xref="GI:354334701"
/translation="SRPEPTAPPAESFRFEETTPTQKQEPKDGEPPLTSLKSLFGSDP
LSQ"
BASE COUNT 463 a 206 c 259 g 256 t 4 other
ORIGIN
1 gagcagacca gagccaacag ccccaccagc agagagcttc aggttcgagg agacaacccc
61 cacccagaag caggagccga aggacgggga accaccctta acttccctca aatcactctt
121 tggcagcgac ccgttgtctc aataaaagta gggggccaga taagagaggc tatcttagat
181 acaggagcag atgatacagt gttagaagac atagadttgc caggaaaatg gaaaccaaaa
241 ataataggag gaattggagg ttttgtcaaa gtaagacagt atgagcamgt acytatagaa
301 atttgtggaa aaaaggctat aggtacagta gtagtaggac ctacaccaat gaacataatt
361 ggaagaaata tattgactca gattggatgc acactaaatt ttccaattag ttccattgaa
421 actgtaccag taaaattaaa gccaggaatg gatggcccaa aagttaaaca atggccattg
481 acagaagaaa aaataaaagc attgacagca atttgtgaag aaatggaaaa ggaaggaaaa
541 attacaaaaa ttgggcctga aaatccatat aatactccaa tatttgccat aaaaaagaag
601 aacagtacta ggtggagaaa actagtagat ttcagggaac tcaataaaag aactcaagac
661 ttttgggaag ttcaattagg aataccacac ccagcagggt taaaaaagaa aaaatcagtg
721 acagtgctag atgtagggga tgcatatttt tcaatccctt tagatgaaaa cttcaggaag
781 tatactgcat tcaccatacc aagtataaac aatgaaacac cagggattag atatcaatat
841 aatgtgcttc cacagggatg gaaaggatca ccagcaatat tccaggctag catgacaaaa
901 atcttagagc cctttaggag acaaaatcca gacatagtta tctatcaata tatggatgac
961 ttgtatgtag gatctgactt agaaataggg caacatagag caaaaataga ggagttaaga
1021 gaayatttat taaaatgggg actattcaca ccagacgaga aacatcagaa agaaccccca
1081 tttctttgga tggggtatga actccatcct gacagatgga cagtacagcc tataatgttg
1141 ccagaaaagg atagctggac tgtcaatgac atacagaagt tagtagga
//
last modified: Tue May 31 10:56 2022