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LOCUS	    JN087533		    1188 bp    DNA     linear	VRL 30-OCT-2011
DEFINITION  HIV-1 isolate A228 from South Africa pol protein (pol) and gag
	    protein (gag) genes, partial cds
ACCESSION   JN087533
VERSION     JN087533.1 GI:354334700
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1188)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2011) Division of Medical Virology, University of
	    Stellenbosch and NHLS Tygerberg, Francie van Zijl Drive, Parow
	    7500, South Africa
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Zyl,G.U.v., Rabie,H., Nuttall,J.J. and Cotton,M.F.
  TITLE     It is time to consider third-line options in
	    antiretroviral-experienced paediatric patients?
  JOURNAL   J Int AIDS Soc. 2011 Nov 15;14:55. doi: 10.1186/1758-2652-14-55.
  PUBMED    22085598
FEATURES             Location/Qualifiers
     source	     1..1188
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A228"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2008"
		     /note="subtype: C"
     gene	     <1..>1188
		     /gene="pol"
     CDS	     <1..>1188
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AER23838.1"
		     /db_xref="GI:354334702"
		     /translation="EQTRANSPTSRELQVRGDNPHPEAGAEGRGTTLNFPQITLWQRP
		     VVSIKVGGQIREAILDTGADDTVLEDIXLPGKWKPKIIGGIGGFVKVRQYEXVXIEIC
		     GKKAIGTVVVGPTPMNIIGRNILTQIGCTLNFPISSIETVPVKLKPGMDGPKVKQWPL
		     TEEKIKALTAICEEMEKEGKITKIGPENPYNTPIFAIKKKNSTRWRKLVDFRELNKRT
		     QDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDENFRKYTAFTIPSINNETPGI
		     RYQYNVLPQGWKGSPAIFQASMTKILEPFRRQNPDIVIYQYMDDLYVGSDLEIGQHRA
		     KIEELREXLLKWGLFTPDEKHQKEPPFLWMGYELHPDRWTVQPIMLPEKDSWTVNDIQ
		     KLVG"
     gene	     <1..145
		     /gene="gag"
     CDS	     <1..145
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AER23837.1"
		     /db_xref="GI:354334701"
		     /translation="SRPEPTAPPAESFRFEETTPTQKQEPKDGEPPLTSLKSLFGSDP
		     LSQ"
BASE COUNT	463 a	 206 c	  259 g    256 t      4 other
ORIGIN
       1 gagcagacca gagccaacag ccccaccagc agagagcttc aggttcgagg agacaacccc 
      61 cacccagaag caggagccga aggacgggga accaccctta acttccctca aatcactctt 
     121 tggcagcgac ccgttgtctc aataaaagta gggggccaga taagagaggc tatcttagat 
     181 acaggagcag atgatacagt gttagaagac atagadttgc caggaaaatg gaaaccaaaa 
     241 ataataggag gaattggagg ttttgtcaaa gtaagacagt atgagcamgt acytatagaa 
     301 atttgtggaa aaaaggctat aggtacagta gtagtaggac ctacaccaat gaacataatt 
     361 ggaagaaata tattgactca gattggatgc acactaaatt ttccaattag ttccattgaa 
     421 actgtaccag taaaattaaa gccaggaatg gatggcccaa aagttaaaca atggccattg 
     481 acagaagaaa aaataaaagc attgacagca atttgtgaag aaatggaaaa ggaaggaaaa 
     541 attacaaaaa ttgggcctga aaatccatat aatactccaa tatttgccat aaaaaagaag 
     601 aacagtacta ggtggagaaa actagtagat ttcagggaac tcaataaaag aactcaagac 
     661 ttttgggaag ttcaattagg aataccacac ccagcagggt taaaaaagaa aaaatcagtg 
     721 acagtgctag atgtagggga tgcatatttt tcaatccctt tagatgaaaa cttcaggaag 
     781 tatactgcat tcaccatacc aagtataaac aatgaaacac cagggattag atatcaatat 
     841 aatgtgcttc cacagggatg gaaaggatca ccagcaatat tccaggctag catgacaaaa 
     901 atcttagagc cctttaggag acaaaatcca gacatagtta tctatcaata tatggatgac 
     961 ttgtatgtag gatctgactt agaaataggg caacatagag caaaaataga ggagttaaga 
    1021 gaayatttat taaaatgggg actattcaca ccagacgaga aacatcagaa agaaccccca 
    1081 tttctttgga tggggtatga actccatcct gacagatgga cagtacagcc tataatgttg 
    1141 ccagaaaagg atagctggac tgtcaatgac atacagaagt tagtagga
//
last modified: Tue May 31 10:56 2022


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