View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JF906660 1201 bp RNA linear VRL 14-SEP-2011
DEFINITION HIV-1 isolate BJ07525 from China pol protein (pol) and gag protein
(gag) genes, partial cds
ACCESSION JF906660
VERSION JF906660.1 GI:336360099
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1201)
Show all sequences for reference 1
AUTHORS Ye,J.R., Lu,H.Y., Wang,W.S., Guo,L., Xin,R.L., Yu,S.Q., Wu,T.C.,
Zeng,Y. and He,X.
TITLE The Prevalence of Drug Resistance Mutations Among Treatment-Naive
HIV-Infected Individuals in Beijing, China.
JOURNAL AIDS Res Hum Retroviruses. 2011 Aug 10.
PUBMED 21830915
REFERENCE 2 (bases 1 to 1201)
Show all sequences for reference 2
AUTHORS Ye,J.-R., Lu,H.-Y., Xin,R.-L., Yu,S.-Q., Wang,W.-S., He,X. and
Zeng,Y.
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2011) National Institute for Viral Disease
Control and Prevention, China Center for Disease Prevention and
Control, Yingxin Street Xuan Wu District, Beijng 100052, China
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name BJ07525 Sample city Beijing
Culture method primary Sample tissue plasma Patient sex M Patient
age 24 Risk factor SM CD4 count 542 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1201
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BJ07525"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="01-Sep-2007"
/note="subtype: CRF01_AE"
gene <1..>1201
/gene="pol"
CDS <1..>1201
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEI53839.1"
/db_xref="GI:336360101"
/translation="SFPQITLWQRPLITIKIGGQVKEALLDTGADDTVLEDINLPGKW
KPKMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFP
ISPINTVPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTP
VFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFS
VPLDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQN
PEMVIYQYMDDLYVGSDLEIGQHRTKIDELRAHLLSWGFTTPDKKHQKEPPFLWMGYE
LHPDRWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTD
VVPLTEEA"
gene <1..48
/gene="gag"
CDS <1..48
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AEI53838.1"
/db_xref="GI:336360100"
/translation="SVSLKSLFGNDPSSQ"
BASE COUNT 467 a 200 c 256 g 278 t
ORIGIN
1 tcagtttccc tcaaatcact ctttggcaac gacccctcat cacaataaaa ataggaggac
61 aggtgaaaga agctctatta gatacaggag cagatgacac agtgttagaa gatataaatt
121 taccaggaaa atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaaggc
181 aatatgatca gatacttata gaaatttgtg gaaaaaaggc tataggtaca gtgttggtag
241 gacccacacc tgtcaacata attggacgaa atatgttgac tcagattggt tgtactttaa
301 attttccaat tagtcctatt aacactgtac cagtaacatt aaagccagga atggatggac
361 caaaggttaa acagtggcca ttgacagaag aaaaaataaa agcattaaca gaaatctgta
421 aggaaatgga agaggaagga aaaatctcaa aaattgggcc tgaaaatcca tataatactc
481 cagtatttgc tataaagaaa aaggacagca ccaaatggag gaaattagta gatttcagag
541 agctcaataa aagaactcag gacttttggg aagttcaatt aggaataccg catccagcag
601 gattaaaaaa gaaaaaatca gtgacagtac tagatgtggg agatgcatat ttttcagtcc
661 ctttagatga aagctttaga aagtatactg cattcaccat acctagtaga aacaatgaga
721 caccagggat cagatatcag tacaatgtgc taccacaggg atggaaagga tctccggcaa
781 tattccagtg tagcatgaca aaaatcttag agccctttag aaaacaaaat ccagagatgg
841 ttatctatca atacatggat gacttgtatg taggatctga tttagaaata ggacagcaca
901 gaacaaaaat agatgagcta agagctcatc tattgagctg gggatttact acaccagaca
961 aaaaacatca gaaggaacca ccatttcttt ggatgggata tgaactccat ccggacagat
1021 ggacagtcca gcctatagaa ctgccagaaa aagacagctg gactgtcaat gatatacaga
1081 aattagtggg aaaactaaat tgggcaagtc aaatttatcc agggattaag gtaaagcaac
1141 tgtgtaaact cctcagggga actaaagcat taacagacgt agtaccactg actgaagaag
1201 c
//
last modified: Tue May 31 10:56 2022