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LOCUS JF906637 1201 bp RNA linear VRL 14-SEP-2011
DEFINITION HIV-1 isolate BJ07407 from China pol protein (pol) and gag protein
(gag) genes, partial cds
ACCESSION JF906637
VERSION JF906637.1 GI:336360031
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1201)
Show all sequences for reference 1
AUTHORS Ye,J.R., Lu,H.Y., Wang,W.S., Guo,L., Xin,R.L., Yu,S.Q., Wu,T.C.,
Zeng,Y. and He,X.
TITLE The Prevalence of Drug Resistance Mutations Among Treatment-Naive
HIV-Infected Individuals in Beijing, China.
JOURNAL AIDS Res Hum Retroviruses. 2011 Aug 10.
PUBMED 21830915
REFERENCE 2 (bases 1 to 1201)
Show all sequences for reference 2
AUTHORS Ye,J.-R., Lu,H.-Y., Xin,R.-L., Yu,S.-Q., Wang,W.-S., He,X. and
Zeng,Y.
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2011) National Institute for Viral Disease
Control and Prevention, China Center for Disease Prevention and
Control, Yingxin Street Xuan Wu District, Beijng 100052, China
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name BJ07407 Sample city Beijing
Culture method primary Sample tissue plasma Patient sex M Patient
age 29 Risk factor NR CD4 count 266 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1201
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BJ07407"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="01-Sep-2007"
/note="subtype: B"
gene <1..>1201
/gene="pol"
CDS <1..>1201
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEI53794.1"
/db_xref="GI:336360033"
/translation="NLPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEDMNLPGRW
KPKMIGGIGGFIKVRQYDQIPIEICGHKTEGTVLIGPTPVNIIGRNLLTQLGCTLNFP
ISPIETVPVXLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTP
VFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFS
VPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQN
PDIVIYQYMDDLYVGSDLEIGQHRAKIEXLRQHLLRWGFTTPDKKHQKEPPFLWMGYE
LHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKELCKLIRGTKALTE
VVPLTEEA"
gene <1..48
/gene="gag"
CDS <1..48
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AEI53793.1"
/db_xref="GI:336360032"
/translation="LTSLKSLFGNDPSSQ"
BASE COUNT 461 a 202 c 255 g 281 t 2 other
ORIGIN
1 ttaacctccc tcaaatcact ctttggcaac gacccctcgt cacaataagg ataggggggc
61 aattaaagga agctctatta gatacaggag cagatgatac agtattagaa gacatgaatt
121 tgccaggaag atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac
181 agtatgatca gatacccata gaaatctgtg gacacaagac tgaaggtaca gtattaatag
241 gacctacacc tgtcaacata attggaagaa acctgttgac tcagcttggt tgcactttaa
301 attttcccat tagtcctatt gaaactgtac cagtaaratt aaagccagga atggatggcc
361 caaaagttaa acaatggcca ttgacagaag aaaaaataaa agcattagta gaaatttgta
421 cagaaatgga aaaggaaggg aaaatttcaa aaattgggcc tgaaaatcca tacaatactc
481 cagtatttgc cataaagaaa aaagacagta ctaaatggag aaaattagta gatttcaggg
541 aacttaataa aagaactcaa gacttctggg aagttcaatt aggaatacca catcccgcag
601 ggttaaaaaa gaagaagtcc gtaacagtcc tggatgtggg tgatgcatat ttctcagtcc
661 ctttagataa agacttcagg aagtatactg cattcaccat acctagtata aacaatgaga
721 caccagggat cagatatcag tacaatgtac ttccacaggg atggaaagga tcaccagcaa
781 tatttcaatg tagtatgaca aaaattttgg agccttttag aaaacaaaat ccagacatag
841 ttatctatca atacatggat gatttgtatg taggatctga cttagaaata gggcagcata
901 gagcaaaaat agagraacta agacagcatc tgttgaggtg gggatttacc acaccagaca
961 aaaaacatca gaaagaacct ccatttcttt ggatgggtta tgaactccat cctgacaaat
1021 ggacagtaca gcctatagtg ctgccagaaa aggacagctg gactgtcaat gacatacaga
1081 agttagtggg aaagttaaat tgggcaagtc agatttatgc agggattaag gtaaaggaat
1141 tatgtaaact cattagggga accaaagcac taacagaagt agtaccacta acagaagaag
1201 c
//
last modified: Tue May 31 10:56 2022