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LOCUS JF906617 1201 bp RNA linear VRL 14-SEP-2011
DEFINITION HIV-1 isolate BJ07350 from China pol protein (pol) gene, partial
cds; and nonfunctional gag protein (gag) gene, partial sequence
ACCESSION JF906617
VERSION JF906617.1 GI:336359972
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1201)
Show all sequences for reference 1
AUTHORS Ye,J.R., Lu,H.Y., Wang,W.S., Guo,L., Xin,R.L., Yu,S.Q., Wu,T.C.,
Zeng,Y. and He,X.
TITLE The Prevalence of Drug Resistance Mutations Among Treatment-Naive
HIV-Infected Individuals in Beijing, China.
JOURNAL AIDS Res Hum Retroviruses. 2011 Aug 10.
PUBMED 21830915
REFERENCE 2 (bases 1 to 1201)
Show all sequences for reference 2
AUTHORS Ye,J.-R., Lu,H.-Y., Xin,R.-L., Yu,S.-Q., Wang,W.-S., He,X. and
Zeng,Y.
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2011) National Institute for Viral Disease
Control and Prevention, China Center for Disease Prevention and
Control, Yingxin Street Xuan Wu District, Beijng 100052, China
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name BJ07350 Sample city Beijing
Culture method primary Sample tissue plasma Patient sex M Patient
age 28 Risk factor SM CD4 count 411 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1201
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BJ07350"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="01-Sep-2007"
/note="subtype: B"
gene <1..>1201
/gene="pol"
CDS <1..>1201
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEI53754.1"
/db_xref="GI:336359973"
/translation="NLPQITLWQRPVVIIKIGGQLKEALLDTGADDTVLEEMNLPGRW
KPKMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFP
ISPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTP
VFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFS
VPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQN
PDIVIYQYMDDIYVGSDLEIEQHRIKIEELREHLLRWGLTTPDKKHQKEPPFLWMGYE
LHPDKWTVQPIQLPEKDCWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTE
VVPLTEEA"
gene <1..48
/gene="gag"
misc_feature <1..48
/gene="gag"
/note="nonfunctional gag protein due to mutation"
BASE COUNT 475 a 195 c 248 g 283 t
ORIGIN
1 gtaacctccc tcaaatcact ctttggcaac gacccgtcgt cataataaag ataggggggc
61 aactaaagga agctctatta gatacaggag cagatgatac agtattagaa gaaatgaatt
121 taccaggaag atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac
181 aatatgatca gatagccata gaaatctgtg gacataaagc tataggtaca gtattaatag
241 gacctacacc tgtcaatata attggaagaa atctgttgac tcagcttggc tgtactttaa
301 attttcccat tagtcctatt gatactgtac cagtaaaatt aaagccagga atggatggtc
361 caaaagttaa acaatggcca ttgacagaag aaaaaataaa ggcattagta gaaatttgta
421 cagaaatgga aaaggaagga aaaatttcaa aaattgggcc tgaaaatcca tataatactc
481 cagtatttgc cataaagaaa aaagacagta ctaaatggag aaaattagta gatttcagag
541 aacttaataa gagaactcaa gacttctggg aagttcaatt aggaatacca catccagcag
601 ggttaaaaaa gaaaaaatca gtaacagtac tggatgtggg tgatgcatac ttttcagttc
661 ccttagatga agacttcagg aagtatactg catttaccat acctagtgta aacaatgaga
721 caccagggat tagatatcag tacaatgtgc ttccacaggg gtggaaagga tcaccagcaa
781 tattccaaag tagcatgaca aaaatcttag agccttttag aaaacaaaat ccagacatag
841 ttatctatca atacatggat gatatatatg taggatctga cttagaaata gaacagcata
901 gaataaaaat agaggaactg agagaacatc tgttgaggtg gggacttacc acaccagaca
961 aaaaacatca gaaagaacct ccattccttt ggatgggtta tgaactccat cctgataaat
1021 ggacagtaca gcctatacaa ctaccagaaa aagactgctg gactgtcaat gacatacaga
1081 agttagtggg aaaactgaat tgggcaagtc agatttatgc agggattaaa gtaaagcaat
1141 tatgtaaact ccttagggga accaaggcac taacagaagt agtaccacta acagaagaag
1201 c
//
last modified: Tue May 31 10:56 2022