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LOCUS	    JF811184		     978 bp    DNA     linear	VRL 06-AUG-2011
DEFINITION  HIV-2 isolate H2A31_031708_cINT_WBC_43 from Senegal pol gene,
	    partial sequence
ACCESSION   JF811184
VERSION     JF811184.1 GI:342209357
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 978)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Smith,R.A., Dia Badiane,N.M., Ba,S., Hawes,S.E.,
	    Toure,M., Starling,A.K., Traore,F., Sall,F., Cherne,S.L., Stern,J.,
	    Wong,K.G., Lu,P., Kim,M., Raugi,D.N., Lam,A., Mullins,J.I. and
	    Kiviat,N.B.
  TITLE     HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in
	    Senegal, West Africa
  JOURNAL   PLoS ONE 6 (7), E22204 (2011)
  PUBMED    21765953
REFERENCE   2 (bases 1 to 978)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-APR-2011) Medicine/Allergy & Infectious Diseases,
	    University of Washington School of Medicine, 1959 Pacific St,
	    Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..978
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="H2A31_031708_cINT_WBC_43"
		     /isolation_source="PBMC"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
     gene	     <1..>978
		     /gene="pol"
     misc_feature    <1..>978
		     /gene="pol"
		     /note="nonfunctional integrase due to mutation"
BASE COUNT	369 a	 180 c	  247 g    182 t
ORIGIN
       1 catcagacag gtattattcc tagaaagaat agagcccgct caggaggaac atgaaaaata 
      61 tcatagcaat gtaaaagaac tatcccataa atttggattg cccaacctag tggcaagaca 
     121 aatagtaaac acatgtaccc aatgtcaaca gaaaggggag gctatacatg ggcaagtaaa 
     181 tgcagaatta ggcacgtggc aaacggactg cacacactta gaaggaaagg tcattatagt 
     241 ggcagtgcac gtagcaagtg gatttataga agcagaggtc atcccacagg aaacagggag 
     301 gcaaacagca ctcttcctat taaagctggc cagtaggtgg ccaataacac acctgcacac 
     361 agataatggt gccaacttca cttcacagga agtgaagatg gtggcatggt gggtaggtat 
     421 agaacaatcc ttcggagtac cttacaatcc acaaagccaa ggagtagtag aagcaatgaa 
     481 tcaccaccta aaaaatcaga taagtagaat tagagagcag gcaaacacag tagaaacaat 
     541 agtactgatg gcagttcatt gcatgaattt taaaagaagg ggaggaatag gggatatgac 
     601 cccagcagaa agactaatta atatgatcac cacagaacaa gaaatacaat tcctccaagc 
     661 aaaaaattca aaattcaaaa attttcgggt ctattacaga gaaggcagag atcagctgtg 
     721 gaaaggacct ggggaactac tgtggaaggg agacggagca gtcatagtca aggtagggac 
     781 agacataaaa gtaataccaa gaaggaaagc caagatcatc agagactatg gaggaaggca 
     841 agaactggat agtagtccca acctggaggg tgccagggag gatggagaaa tggcatagcc 
     901 ttgtcaagta tctaaaatac agaacaggag atctagagaa ggtgcgctat gtcccccacc 
     961 ataaggtggg atgggcgt
//
last modified: Tue May 31 10:56 2022


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