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LOCUS JF811184 978 bp DNA linear VRL 06-AUG-2011
DEFINITION HIV-2 isolate H2A31_031708_cINT_WBC_43 from Senegal pol gene,
partial sequence
ACCESSION JF811184
VERSION JF811184.1 GI:342209357
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 978)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Smith,R.A., Dia Badiane,N.M., Ba,S., Hawes,S.E.,
Toure,M., Starling,A.K., Traore,F., Sall,F., Cherne,S.L., Stern,J.,
Wong,K.G., Lu,P., Kim,M., Raugi,D.N., Lam,A., Mullins,J.I. and
Kiviat,N.B.
TITLE HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in
Senegal, West Africa
JOURNAL PLoS ONE 6 (7), E22204 (2011)
PUBMED 21765953
REFERENCE 2 (bases 1 to 978)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2011) Medicine/Allergy & Infectious Diseases,
University of Washington School of Medicine, 1959 Pacific St,
Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..978
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="H2A31_031708_cINT_WBC_43"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
gene <1..>978
/gene="pol"
misc_feature <1..>978
/gene="pol"
/note="nonfunctional integrase due to mutation"
BASE COUNT 369 a 180 c 247 g 182 t
ORIGIN
1 catcagacag gtattattcc tagaaagaat agagcccgct caggaggaac atgaaaaata
61 tcatagcaat gtaaaagaac tatcccataa atttggattg cccaacctag tggcaagaca
121 aatagtaaac acatgtaccc aatgtcaaca gaaaggggag gctatacatg ggcaagtaaa
181 tgcagaatta ggcacgtggc aaacggactg cacacactta gaaggaaagg tcattatagt
241 ggcagtgcac gtagcaagtg gatttataga agcagaggtc atcccacagg aaacagggag
301 gcaaacagca ctcttcctat taaagctggc cagtaggtgg ccaataacac acctgcacac
361 agataatggt gccaacttca cttcacagga agtgaagatg gtggcatggt gggtaggtat
421 agaacaatcc ttcggagtac cttacaatcc acaaagccaa ggagtagtag aagcaatgaa
481 tcaccaccta aaaaatcaga taagtagaat tagagagcag gcaaacacag tagaaacaat
541 agtactgatg gcagttcatt gcatgaattt taaaagaagg ggaggaatag gggatatgac
601 cccagcagaa agactaatta atatgatcac cacagaacaa gaaatacaat tcctccaagc
661 aaaaaattca aaattcaaaa attttcgggt ctattacaga gaaggcagag atcagctgtg
721 gaaaggacct ggggaactac tgtggaaggg agacggagca gtcatagtca aggtagggac
781 agacataaaa gtaataccaa gaaggaaagc caagatcatc agagactatg gaggaaggca
841 agaactggat agtagtccca acctggaggg tgccagggag gatggagaaa tggcatagcc
901 ttgtcaagta tctaaaatac agaacaggag atctagagaa ggtgcgctat gtcccccacc
961 ataaggtggg atgggcgt
//
last modified: Tue May 31 10:56 2022