HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JF811138		     978 bp    DNA     linear	VRL 06-AUG-2011
DEFINITION  HIV-2 isolate H2A06_030508_cINT_WBC_1 from Senegal pol gene,
	    partial sequence
ACCESSION   JF811138
VERSION     JF811138.1 GI:342209311
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 978)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Smith,R.A., Dia Badiane,N.M., Ba,S., Hawes,S.E.,
	    Toure,M., Starling,A.K., Traore,F., Sall,F., Cherne,S.L., Stern,J.,
	    Wong,K.G., Lu,P., Kim,M., Raugi,D.N., Lam,A., Mullins,J.I. and
	    Kiviat,N.B.
  TITLE     HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in
	    Senegal, West Africa
  JOURNAL   PLoS ONE 6 (7), E22204 (2011)
  PUBMED    21765953
REFERENCE   2 (bases 1 to 978)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-APR-2011) Medicine/Allergy & Infectious Diseases,
	    University of Washington School of Medicine, 1959 Pacific St,
	    Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..978
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="H2A06_030508_cINT_WBC_1"
		     /isolation_source="PBMC"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
     gene	     <1..>978
		     /gene="pol"
     misc_feature    <1..>978
		     /gene="pol"
		     /note="nonfunctional integrase due to mutation"
BASE COUNT	373 a	 170 c	  234 g    194 t      7 other
ORIGIN
       1 catcagacaa gtattattcc tagaaaaaat agagccagct caggaagaac atgaaaaata 
      61 tcacagcaat gtaaaagaac tatcccataa atttggattg cctaaaytag tggcaagaca 
     121 aatagtaaac acatgtrccc aatgtcagca gaaaggggag gctatacatg ggcaagtaaa 
     181 tgcagaatta ggcacttggc aaatggactg tacacactta gaaggaaaga tcattatagt 
     241 agcagtacac gttgcaagtg gatttataga agcagaagtc atcccacagg aatcaggaag 
     301 gcatacagca ctcttcctat taaaattggc cagtaggtgg ccaataacac acttgcacac 
     361 agacaatggt gccaacttca cttcacagga rgtraagatg gtggcatggt gggtaggtat 
     421 agaacaatcc ttcggagtac cttacaatcc acaaagccaa ggagtagtag aagcaatgaa 
     481 tcaccacctr aaaaatcaga tagatagaat tagagaccar gcaaacacag tagaracaat 
     541 agtactaatg gcagttcatt gcatgaattt taaaagaagg ggaggaatag gggatatgac 
     601 cccagcagaa aggctaatca atatgatcac tacagaacaa gaaatacaat tcttccaagc 
     661 aaaaaattta aaattcaaaa attttcgggt ctatttcaga gaaggcagag atcagctgtg 
     721 gaaaggaccc ggggagctac tgtggaaggg agaaggagca gtcatagtca aggtagggac 
     781 agacataaaa gtaataccaa gaaggaaagc caagatcatc aaagattatg gaggaaggca 
     841 agagctggat agtggttcca acttggaggg taccagggag gatggagaaa tggcatagcc 
     901 ttgtcaagta tctaaaatac agaacaaaag atctagagaa ggtgcgctat gtcccccacc 
     961 ataaggtggg atgggcgt
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health