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LOCUS JF811138 978 bp DNA linear VRL 06-AUG-2011
DEFINITION HIV-2 isolate H2A06_030508_cINT_WBC_1 from Senegal pol gene,
partial sequence
ACCESSION JF811138
VERSION JF811138.1 GI:342209311
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 978)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Smith,R.A., Dia Badiane,N.M., Ba,S., Hawes,S.E.,
Toure,M., Starling,A.K., Traore,F., Sall,F., Cherne,S.L., Stern,J.,
Wong,K.G., Lu,P., Kim,M., Raugi,D.N., Lam,A., Mullins,J.I. and
Kiviat,N.B.
TITLE HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in
Senegal, West Africa
JOURNAL PLoS ONE 6 (7), E22204 (2011)
PUBMED 21765953
REFERENCE 2 (bases 1 to 978)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2011) Medicine/Allergy & Infectious Diseases,
University of Washington School of Medicine, 1959 Pacific St,
Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..978
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="H2A06_030508_cINT_WBC_1"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
gene <1..>978
/gene="pol"
misc_feature <1..>978
/gene="pol"
/note="nonfunctional integrase due to mutation"
BASE COUNT 373 a 170 c 234 g 194 t 7 other
ORIGIN
1 catcagacaa gtattattcc tagaaaaaat agagccagct caggaagaac atgaaaaata
61 tcacagcaat gtaaaagaac tatcccataa atttggattg cctaaaytag tggcaagaca
121 aatagtaaac acatgtrccc aatgtcagca gaaaggggag gctatacatg ggcaagtaaa
181 tgcagaatta ggcacttggc aaatggactg tacacactta gaaggaaaga tcattatagt
241 agcagtacac gttgcaagtg gatttataga agcagaagtc atcccacagg aatcaggaag
301 gcatacagca ctcttcctat taaaattggc cagtaggtgg ccaataacac acttgcacac
361 agacaatggt gccaacttca cttcacagga rgtraagatg gtggcatggt gggtaggtat
421 agaacaatcc ttcggagtac cttacaatcc acaaagccaa ggagtagtag aagcaatgaa
481 tcaccacctr aaaaatcaga tagatagaat tagagaccar gcaaacacag tagaracaat
541 agtactaatg gcagttcatt gcatgaattt taaaagaagg ggaggaatag gggatatgac
601 cccagcagaa aggctaatca atatgatcac tacagaacaa gaaatacaat tcttccaagc
661 aaaaaattta aaattcaaaa attttcgggt ctatttcaga gaaggcagag atcagctgtg
721 gaaaggaccc ggggagctac tgtggaaggg agaaggagca gtcatagtca aggtagggac
781 agacataaaa gtaataccaa gaaggaaagc caagatcatc aaagattatg gaggaaggca
841 agagctggat agtggttcca acttggaggg taccagggag gatggagaaa tggcatagcc
901 ttgtcaagta tctaaaatac agaacaaaag atctagagaa ggtgcgctat gtcccccacc
961 ataaggtggg atgggcgt
//
last modified: Tue May 31 10:56 2022