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LOCUS	    JF811134		     972 bp    DNA     linear	VRL 06-AUG-2011
DEFINITION  HIV-2 isolate H2A03_032508_cINT_WBC_15 from Senegal pol gene,
	    partial sequence
ACCESSION   JF811134
VERSION     JF811134.1 GI:342209307
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 972)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Smith,R.A., Dia Badiane,N.M., Ba,S., Hawes,S.E.,
	    Toure,M., Starling,A.K., Traore,F., Sall,F., Cherne,S.L., Stern,J.,
	    Wong,K.G., Lu,P., Kim,M., Raugi,D.N., Lam,A., Mullins,J.I. and
	    Kiviat,N.B.
  TITLE     HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in
	    Senegal, West Africa
  JOURNAL   PLoS ONE 6 (7), E22204 (2011)
  PUBMED    21765953
REFERENCE   2 (bases 1 to 972)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-APR-2011) Medicine/Allergy & Infectious Diseases,
	    University of Washington School of Medicine, 1959 Pacific St,
	    Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..972
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="H2A03_032508_cINT_WBC_15"
		     /isolation_source="PBMC"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
     gene	     <1..>972
		     /gene="pol"
     misc_feature    <1..>972
		     /gene="pol"
		     /note="nonfunctional integrase due to mutation"
BASE COUNT	365 a	 167 c	  234 g    186 t     20 other
ORIGIN
       1 tatcagrcaa gtattattcc tagaaaaaat agagcccgct caggargaac atgaaaagta 
      61 tcatagcaat gtaaaagaac tatcccataa atttggrttg cccaaactag tggcaagaca 
     121 aatagtaaac acatgtrccc aatgtcaaca gaaaggggag gcyatacatg ggcaagtaaa 
     181 tgcagaatta ggcacttggc aaatggactg tacacactta gaaggaaaga tcattatagt 
     241 agcagtacay gttgcaagtg gattyataga agcagaagtc atcccacagg aatcaggaag 
     301 acaracagca ctcttcctrt taaaactggc cagyaggtgg ccaataacac acttgcacac 
     361 agacaatggt gccaayttca cttcacagga rgtaaagatg gtggcatggt gggcaggtat 
     421 agaacaatcc ttyggagtgc cttacaatcc acaaagccar ggrgtagtag aagcaatgaa 
     481 tcaccaccta aaaaatcaga taagtaraat tagagagcag gcaaacacaa tggaaacaat 
     541 agtactaatg gcagttcatt gcatgaattt taaaagaagg ggaggaatag gggatatgac 
     601 cccagcagaa agactagtca atatgatyac tacagaacaa gaaatacaat tcctccaagc 
     661 aaaaaattca aaatttaaaa attttcgggt ctatttcaga gaaggcagag atcagctgtg 
     721 gaaaggacct ggggagctac tgtggaaggg agaaggagca gtcctagtca aggtagggac 
     781 agaaataaaa ataataccaa gaaggaaagc caagatcatc agagactatg gaggaaggca 
     841 agagatggat agtrgttcca acttggaggg tgccagggag gatggagaag tggcatagcc 
     901 ttgtcaagta yctaaaatac agaacaggag acctagagag ggtrtgctat gtcccccacc 
     961 ataaggtggg at
//
last modified: Tue May 31 10:56 2022


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