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LOCUS JF811134 972 bp DNA linear VRL 06-AUG-2011
DEFINITION HIV-2 isolate H2A03_032508_cINT_WBC_15 from Senegal pol gene,
partial sequence
ACCESSION JF811134
VERSION JF811134.1 GI:342209307
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 972)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Smith,R.A., Dia Badiane,N.M., Ba,S., Hawes,S.E.,
Toure,M., Starling,A.K., Traore,F., Sall,F., Cherne,S.L., Stern,J.,
Wong,K.G., Lu,P., Kim,M., Raugi,D.N., Lam,A., Mullins,J.I. and
Kiviat,N.B.
TITLE HIV-2 Integrase Variation in Integrase Inhibitor-Naive Adults in
Senegal, West Africa
JOURNAL PLoS ONE 6 (7), E22204 (2011)
PUBMED 21765953
REFERENCE 2 (bases 1 to 972)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2011) Medicine/Allergy & Infectious Diseases,
University of Washington School of Medicine, 1959 Pacific St,
Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..972
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="H2A03_032508_cINT_WBC_15"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
gene <1..>972
/gene="pol"
misc_feature <1..>972
/gene="pol"
/note="nonfunctional integrase due to mutation"
BASE COUNT 365 a 167 c 234 g 186 t 20 other
ORIGIN
1 tatcagrcaa gtattattcc tagaaaaaat agagcccgct caggargaac atgaaaagta
61 tcatagcaat gtaaaagaac tatcccataa atttggrttg cccaaactag tggcaagaca
121 aatagtaaac acatgtrccc aatgtcaaca gaaaggggag gcyatacatg ggcaagtaaa
181 tgcagaatta ggcacttggc aaatggactg tacacactta gaaggaaaga tcattatagt
241 agcagtacay gttgcaagtg gattyataga agcagaagtc atcccacagg aatcaggaag
301 acaracagca ctcttcctrt taaaactggc cagyaggtgg ccaataacac acttgcacac
361 agacaatggt gccaayttca cttcacagga rgtaaagatg gtggcatggt gggcaggtat
421 agaacaatcc ttyggagtgc cttacaatcc acaaagccar ggrgtagtag aagcaatgaa
481 tcaccaccta aaaaatcaga taagtaraat tagagagcag gcaaacacaa tggaaacaat
541 agtactaatg gcagttcatt gcatgaattt taaaagaagg ggaggaatag gggatatgac
601 cccagcagaa agactagtca atatgatyac tacagaacaa gaaatacaat tcctccaagc
661 aaaaaattca aaatttaaaa attttcgggt ctatttcaga gaaggcagag atcagctgtg
721 gaaaggacct ggggagctac tgtggaaggg agaaggagca gtcctagtca aggtagggac
781 agaaataaaa ataataccaa gaaggaaagc caagatcatc agagactatg gaggaaggca
841 agagatggat agtrgttcca acttggaggg tgccagggag gatggagaag tggcatagcc
901 ttgtcaagta yctaaaatac agaacaggag acctagagag ggtrtgctat gtcccccacc
961 ataaggtggg at
//
last modified: Tue May 31 10:56 2022