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LOCUS JF706463 2517 bp RNA linear VRL 12-APR-2011
DEFINITION HIV-1 isolate KM34SeR21 from Cameroon envelope glycoprotein (env)
gene, complete cds
ACCESSION JF706463
VERSION JF706463.1 GI:328550349
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2517)
Show all sequences for reference 1
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Gonzalez-Perez,M.P.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Intercompartmental Recombination of HIV-1 Contributes to env
Intrahost Diversity and Modulates Viral Tropism and Sensitivity to
Entry Inhibitors.
JOURNAL J. Virol.. 85(12); 6024-37 (2011)
PUBMED 21471230
REFERENCE 2 (bases 1 to 2517)
Show all sequences for reference 2
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Paz Gonzalez-Perez,M.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2011) School of Molecular Medical Sciences, The
University of Nottingham, Queen''s Medical Centre, Nottingham NG7
7UH, UK
FEATURES Location/Qualifiers
source 1..2517
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="KM34SeR21"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="27-Mar-2006"
/note="subtype: U"
gene 1..2517
/gene="env"
CDS 1..2517
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEB22029.1"
/db_xref="GI:328550350"
/translation="MKARGTQMSWPHWWKWGTLILGLVIICSASDLWVTVYYGVPVWK
DAVTTLFCASDAKAYDREVHNVWATHACVPTDPDPQEMFLVNVSESFNMWENNMVDQM
HTDIISLWDQSLKPCVQLTPLCVTLNCTDANKTSTDPLREVKNCSFNITTELKDKQKK
EYALFYRVDVVPINSNNSSYRLINCNTSTVTQACPKVSFEPIPIHYCAPAGFAILKCN
DKRFNGTGLCKNVSTVQCTHGIRPVVTTQLLLNGSLSENGTIIRSKNISDNTKNIIVQ
FNKTVAINCTRPNNNTRKSVHIGPGQTFYATGDIIGDIRQAHCNVSEKEWNEALQQVV
TQLGEHFKDRNISFTNSSGGDLEIVTHSFNCGGEFFYCNTTNLFNSTWETNSNNTNNT
MSNGTITLPCKIKQIINMWQRVGRAMYAPPIAGKIQCNSNITGLILTRDGGNTSDEIF
RPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRQVVQKVKRAVGIGAVFLGFLGAA
GSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQLQARLLAVE
RYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKTHDDIWENMTWMQWEKEISNYTDTI
YGLIEKAQNQQEKNEQELLALDKWASLWSWFSITNWLWYIRLFIMIVGGLIGLRIVFA
VLNIINRCRQGYSPLSFQTLTHHQKGPDRPGEIEEGGGEQDKDRSVRLVSGFFALAWD
DLRSLCLFSYHHLRDFTLIAVRTVTRGLQLGWEALKYLWNLLAYWGQEIKNSAINLLD
TTAIAVANWTDRVIEIGQRVGRAILHIPRRIRQGFKRALL"
BASE COUNT 887 a 439 c 577 g 614 t
ORIGIN
1 atgaaagcga gggggacaca gatgagttgg ccacactggt ggaaatgggg aactttgatc
61 cttgggttgg tgataatttg tagtgcctca gacttgtggg ttacagttta ttatggggtt
121 cctgtgtgga aagatgcagt taccacccta ttttgtgcat cagatgctaa agcatatgat
181 agagaggtac ataatgtctg ggctacacat gcctgtgtac ctacagatcc cgacccacaa
241 gaaatgtttc tagtaaatgt atcagaaagt tttaacatgt gggagaataa catggtagac
301 cagatgcata cagacataat cagtttatgg gatcaaagct taaagccatg tgtacaatta
361 accccactct gtgttacttt aaattgtact gatgctaata aaactagcac cgaccccctg
421 cgggaagtaa aaaactgttc tttcaatata accacagaat taaaagataa acagaaaaaa
481 gaatatgcat tgttttatag ggttgatgta gtaccaatca acagcaacaa cagtagttat
541 aggctaataa attgtaatac ctcaactgtt acacaggctt gtccaaaggt atcctttgag
601 ccaattccca tacattattg tgctcctgct ggttttgcga ttctaaagtg taatgataaa
661 aggttcaatg ggacagggct atgcaagaat gtcagcacag tacaatgcac acatggaatt
721 agaccagtgg tgacaactca actactgtta aatggcagtc tatcagaaaa tggtacaata
781 attagatcta aaaatatctc agataataca aaaaacataa tagtacagtt taataaaact
841 gtagcaatta attgtacaag acccaacaac aatacaagaa aaagtgtaca tataggacca
901 ggacaaacat tctatgcaac aggtgacata ataggggata taagacaagc acattgtaat
961 gtcagtgaaa aagaatggaa tgaagcttta caacaggtag ttacacaatt aggggaacac
1021 tttaaagaca gaaatataag ctttactaac agttcaggag gggatttaga aattgtaaca
1081 catagtttta attgtggagg agaattcttc tattgcaata caacaaatct atttaacagc
1141 acttgggaaa caaactcaaa taacacaaat aacacaatgt caaatggcac tataactctc
1201 ccatgcaaaa taaaacaaat tataaacatg tggcaaagag tagggcgagc aatgtatgcc
1261 cctcccattg ccggaaaaat tcaatgtaac tcaaatatca caggtctcat attaacaaga
1321 gatggtggta atacaagtga tgagatcttc agacctggag ggggagacat gagagacaac
1381 tggagaagtg aactgtataa atataaggta gtgaaaattg aaccactagg agtagcaccc
1441 accagggcaa aaagacaagt ggtgcagaaa gtaaaaagag cagtgggaat aggagctgtg
1501 ttccttgggt tcttgggagc agcaggaagc actatgggcg cggcgtcaat aacgctgacg
1561 gtacaggcca gacaattatt gtctggtata gtgcaacagc aaagcaattt gctgaaggct
1621 atagaagcgc aacagcatct gttgcagctc acagtctggg gcattaaaca gctccaggcg
1681 agactcctgg ctgtggaaag atacctaaag gaccaacagc ttctagggat ttggggctgc
1741 tctggaaaac tcatctgcac cactaatgtg ccctggaatt ctagttggag taataaaact
1801 catgacgaca tttgggaaaa catgacctgg atgcaatggg aaaaggagat tagcaattac
1861 acagacacaa tatacggatt aattgaaaaa gcacaaaacc agcaggaaaa gaatgaacag
1921 gaattattgg cattggacaa atgggcaagt ctgtggagtt ggtttagcat aacaaattgg
1981 ctatggtata taagattatt tataatgata gtaggaggtt taatagggtt aagaatagtt
2041 tttgctgtgc ttaatataat aaatagatgt aggcagggat actcaccttt gtcattccag
2101 acccttaccc accaccagaa gggacccgac aggcccggag aaatcgaaga aggaggtgga
2161 gagcaagaca aagacagatc cgtgagatta gtgagcggat tctttgcgct tgcctgggac
2221 gacctgcgga gcctgtgcct cttcagttac caccacttga gagacttcac attaattgca
2281 gtgaggactg tgaccagggg actgcaactg gggtgggaag ccctcaaata tctgtggaat
2341 cttctagcat actggggtca ggagataaag aatagtgcta ttaatttgct tgatacaaca
2401 gcaatagcag tagctaactg gacagataga gttatagaaa taggacaaag agttggtaga
2461 gctattctcc acatacccag aagaataaga caaggtttta aaagggcttt gctataa
//
last modified: Tue May 31 10:56 2022