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LOCUS JF706448 2541 bp RNA linear VRL 12-APR-2011
DEFINITION HIV-1 isolate KM34BlR1 from Cameroon envelope glycoprotein (env)
gene, complete cds
ACCESSION JF706448
VERSION JF706448.1 GI:328550320
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2541)
Show all sequences for reference 1
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Gonzalez-Perez,M.P.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Intercompartmental Recombination of HIV-1 Contributes to env
Intrahost Diversity and Modulates Viral Tropism and Sensitivity to
Entry Inhibitors.
JOURNAL J. Virol.. 85(12); 6024-37 (2011)
PUBMED 21471230
REFERENCE 2 (bases 1 to 2541)
Show all sequences for reference 2
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Paz Gonzalez-Perez,M.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2011) School of Molecular Medical Sciences, The
University of Nottingham, Queen''s Medical Centre, Nottingham NG7
7UH, UK
FEATURES Location/Qualifiers
source 1..2541
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="KM34BlR1"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="27-Mar-2006"
/note="subtype: U"
gene 1..2541
/gene="env"
CDS 1..2541
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEB22015.1"
/db_xref="GI:328550321"
/translation="MKARGTQMSWPCLWKWGTLILGLVIICRASDLWVTVYYGVPVWK
DAETTLFCASDAKAYDKEVHNVWATHACVPTDPNPQERILENVSESFNMWENNMVDQM
HTDIVSLWDQSLKPCVQLTPLCVTLNCTDVNTNTSSANNTLPEEQGAIKNCSFNITTE
LKDKQKKEYALFYRVDVVPINNNSSSSYRLINCNTSTVTQACPKVSFEPIPIHYCAPA
GFAILKCNDKRFNGTGLCKNVSTVQCTHGIRPVVTTQLLLNGSLSENGTIIRSKNISD
NTKNIIVQFNKTVAINCTRPNNNTRKSVHIGPGQTFYATGDIIGDIRKAHCNVSEKEW
NEALQQVVTQLGEHFKDRNISFTNSSGGDLEIVTHSFNCGGEFFYCNTTNLFNSTWET
NSNNTNNTMSNGTITLPCKIKQIINMWQRVGRAMYAPPIAGKIQCNSNITGLILTRDG
GNTSDEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRQVVQRAKRAVGIGAV
FLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQL
QARLLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSHDDIWENMTWMQWEKE
ISNYTDTIYGLIEKAQNQQEKNEQELLALDKWASLWSWFSITNWLWYIRLFIMIVGGL
IGLRIVFAVLNIINRCRQGYSPLSFQTLTHHQRGPDRPGEIEEGGGEQDKDRSVRLVS
GFFALAWDDLRSLCLFSYHHLRDFTLIAVRTVTRGLQLGWEVLKYLWNLLAYWGQEIK
NSAINLLDTTAIAVANWTDRVIEIGQRVGRAILHIPRRIRQGFERALL"
BASE COUNT 895 a 437 c 590 g 619 t
ORIGIN
1 atgaaagcga gggggacaca gatgagttgg ccatgcttgt ggaaatgggg gactttgatc
61 cttgggttgg tgataatttg tagggcctca gacttgtggg ttacagttta ttatggggtt
121 cctgtgtgga aagatgcaga gaccacccta ttttgtgcat cagatgctaa agcatatgat
181 aaagaggtac ataatgtctg ggctacacat gcctgtgtac ctacagatcc caacccacaa
241 gaaaggattc tagaaaatgt atcagaaagt tttaacatgt gggagaataa catggtggac
301 cagatgcata cagacatagt cagtttatgg gatcaaagct taaagccatg tgtacagcta
361 accccactct gtgttacttt aaattgtact gatgttaata ctaatactag tagtgctaat
421 aacaccctgc cggaagaaca aggggcaata aaaaactgtt ctttcaatat aaccacagaa
481 ttaaaagata aacagaaaaa agaatatgca ttgttttata gggttgatgt agtaccaatc
541 aacaacaaca gcagtagtag ttataggcta ataaattgta atacctcaac tgttacacag
601 gcttgtccaa aggtatcctt tgagccaatt cccatacatt attgtgctcc tgctggtttt
661 gcgattctaa agtgtaatga taaaaggttc aatgggacag ggctatgtaa gaatgtcagc
721 acagtacaat gcacacatgg aattagacca gtggtgacaa ctcaactact gttaaatggc
781 agtctatcag aaaatggtac aataattaga tctaaaaata tctcagataa tacaaaaaac
841 ataatagtac agtttaataa aactgtagca attaattgta caagacccaa caacaataca
901 agaaaaagtg tacatatagg accaggacaa acattctatg caacaggtga cataataggg
961 gatataagaa aagcacattg taatgtcagt gaaaaagaat ggaatgaagc tttacaacag
1021 gtagttacac aattagggga acactttaaa gacagaaata taagctttac taacagttca
1081 ggaggggatt tagaaattgt aacacatagt tttaattgtg gaggagaatt cttctattgc
1141 aatacaacaa atctatttaa cagcacttgg gaaacaaact caaataacac aaataacaca
1201 atgtcaaatg gcactataac tctcccatgc aaaataaaac aaattataaa catgtggcaa
1261 agagtagggc gagcaatgta tgcccctccc attgccggaa aaattcaatg taactcaaat
1321 atcacaggtc tcatattaac aagagatggt ggtaatacaa gtgatgagat cttcagacct
1381 ggagggggag acatgagaga caactggaga agtgaactgt ataaatataa ggtagtgaaa
1441 attgaaccac taggagtagc acccaccagg gcaaaaagac aagtggtgca gagagcaaaa
1501 agagcagtgg gaataggagc tgtgttcctt gggttcttgg gagcagcagg aagcactatg
1561 ggcgcggcgt caataacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa
1621 cagcaaagca atttgctgaa ggctatagaa gcgcaacagc atctgttgca gctcacagtc
1681 tggggcatta aacagctcca ggcgagactc ctggctgtgg aaagatacct aaaggaccag
1741 cagcttctag ggatttgggg ctgctctgga aaactcatct gcaccactaa tgtgccctgg
1801 aattctagtt ggagtaataa atctcatgac gacatttggg aaaacatgac ctggatgcaa
1861 tgggaaaagg agattagcaa ttacacagac acaatatacg gattaattga aaaagcacaa
1921 aaccagcagg aaaagaatga acaggaatta ttggcattgg acaaatgggc aagtctgtgg
1981 agttggttta gcataacaaa ttggctatgg tatataagat tatttataat gatagtagga
2041 ggtttaatag ggttaagaat agtttttgct gtgcttaata taataaatag atgtaggcag
2101 ggatactcac ctttgtcatt ccagaccctt acccaccacc agaggggacc cgacaggccc
2161 ggagaaatcg aagaaggagg tggagagcaa gacaaagaca gatccgtgag attagtgagc
2221 ggattctttg cgcttgcctg ggacgacctg cggagcctgt gcctcttcag ttaccaccac
2281 ttgagagact tcacattaat tgcagtgagg actgtgacca ggggactgca actggggtgg
2341 gaagtcctca aatatctatg gaatcttcta gcatactggg gtcaggagat aaagaatagt
2401 gctattaatt tgcttgatac aacagcaata gcagtagcta actggacaga tagagttata
2461 gaaataggac aaagagttgg tagagctatt ctccacatac ccagaagaat aagacaaggt
2521 tttgaaaggg ctttgctata a
//
last modified: Tue May 31 10:56 2022