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LOCUS	    JF323624		    1258 bp    RNA     linear	VRL 27-FEB-2011
DEFINITION  HIV-1 isolate MA306w1.7 from Morocco pol protein (pol) gene,
	    partial cds
ACCESSION   JF323624
VERSION     JF323624.1 GI:323710606
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1258)
            Show all sequences for reference 1
  AUTHORS   Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
	    Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
	    Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
	    Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
	    African patients living in Italy.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
  PUBMED    21453131
REFERENCE   2 (bases 1 to 1258)
            Show all sequences for reference 2
  AUTHORS   Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
	    Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
	    Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
	    Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2011) Experimental Medicine and Biochemical
	    Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
	    00133, Italy
FEATURES             Location/Qualifiers
     source	     1..1258
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="MA306w1.7"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Morocco"
		     /collection_date="04-Dec-2006"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1258
		     /gene="pol"
     CDS	     <1..>1258
		     /gene="pol"
		     /note="PR_RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADY03179.1"
		     /db_xref="GI:323710607"
		     /translation="PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALXDICXEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
		     LDESFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAVFQSSMTKILGPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLXXWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKEPVHGVYYD"
BASE COUNT	487 a	 202 c	  264 g    285 t     20 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa aaataggggg acagytaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagacataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttya ttaaagtaag acaatatgat 
     181 cagatactta tggaaatttg tggaaaaaar gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 atwagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaargtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa yagacatttg trcagagatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag ggaactcaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cgcatccagc gggtttgaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggrgatgcat acttttcaat tcccttagat 
     661 gaaagcttta gaaagtatac tgcattcacc atacctagta caaacaatga gacaccagga 
     721 gtcagatatc agtacaatgt gctaccacag ggatggaaag ggtcrccagc agtatttcar 
     781 tcaagcatga caaaratttt agggcctttt agagcaaaaa atccagagat agtgatctac 
     841 caatacatgg atgatttgta tgtaggatct gacttagaga taggrcagca tagagcaaaa 
     901 atagaggagt tgagrgarca tctamtgraa tggggactta ccacaccaga caaaaaacac 
     961 cagaaagaac cyccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatmc agctgccaga aaargacagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaagca rctgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagac atagtaacac tgactgagga agcagaatta 
    1201 gaattggcag agaacagaga aattctaaaa gaacctgtac atggagtata ttatgacc
//
last modified: Tue May 31 10:56 2022


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