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LOCUS JF323624 1258 bp RNA linear VRL 27-FEB-2011
DEFINITION HIV-1 isolate MA306w1.7 from Morocco pol protein (pol) gene,
partial cds
ACCESSION JF323624
VERSION JF323624.1 GI:323710606
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1258)
Show all sequences for reference 1
AUTHORS Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
African patients living in Italy.
JOURNAL AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
PUBMED 21453131
REFERENCE 2 (bases 1 to 1258)
Show all sequences for reference 2
AUTHORS Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2011) Experimental Medicine and Biochemical
Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
00133, Italy
FEATURES Location/Qualifiers
source 1..1258
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="MA306w1.7"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Morocco"
/collection_date="04-Dec-2006"
/note="subtype: CRF02_AG"
gene <1..>1258
/gene="pol"
CDS <1..>1258
/gene="pol"
/note="PR_RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADY03179.1"
/db_xref="GI:323710607"
/translation="PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILMEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALXDICXEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
LDESFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAVFQSSMTKILGPFRAKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLXXWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
TLTEEAELELAENREILKEPVHGVYYD"
BASE COUNT 487 a 202 c 264 g 285 t 20 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa aaataggggg acagytaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagacataaa tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttya ttaaagtaag acaatatgat
181 cagatactta tggaaatttg tggaaaaaar gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca
301 atwagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaargtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa yagacatttg trcagagatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag ggaactcaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cgcatccagc gggtttgaaa
601 aagaaaaaat cagtaacagt actggatgtg ggrgatgcat acttttcaat tcccttagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta caaacaatga gacaccagga
721 gtcagatatc agtacaatgt gctaccacag ggatggaaag ggtcrccagc agtatttcar
781 tcaagcatga caaaratttt agggcctttt agagcaaaaa atccagagat agtgatctac
841 caatacatgg atgatttgta tgtaggatct gacttagaga taggrcagca tagagcaaaa
901 atagaggagt tgagrgarca tctamtgraa tggggactta ccacaccaga caaaaaacac
961 cagaaagaac cyccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcctatmc agctgccaga aaargacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaagca rctgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagac atagtaacac tgactgagga agcagaatta
1201 gaattggcag agaacagaga aattctaaaa gaacctgtac atggagtata ttatgacc
//
last modified: Tue May 31 10:56 2022