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LOCUS JF323605 1302 bp RNA linear VRL 27-FEB-2011
DEFINITION HIV-1 isolate GH081q2.7 from Ghana pol protein (pol) gene, partial
cds
ACCESSION JF323605
VERSION JF323605.1 GI:323710568
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
African patients living in Italy.
JOURNAL AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
PUBMED 21453131
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2011) Experimental Medicine and Biochemical
Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
00133, Italy
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH081q2.7"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Ghana"
/collection_date="30-Nov-2005"
/note="subtype: CRF02_AG"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="PR_RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADY03160.1"
/db_xref="GI:323710569"
/translation="PQITLWQRPXVKVRIXGQLIEALLDTGADDTVLEEIXLPGKWKP
KMIGGIGGFIKVRQYDQILLEICGKXAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPXF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEXFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPXXFQASMXKILEPFRXKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLXWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
XLTEEAELELAENREILKEPVHGVYYDPAKDLIAEIQKQGQD"
BASE COUNT 506 a 203 c 263 g 295 t 35 other
ORIGIN
1 cctcaaatca ctctttggca rcgaccckta gtcaargtaa gaatagrggg acagctaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataam tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat
181 cagatacttc tagaaatttg tggaaaaarg gcyataggta cagtattagt aggacctaca
241 cctgtcaaca taattggrmg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaacagt gccagtaaaa ttgaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagagatg
421 gaaaargaag graaaatttc aaaaattggg cctgaaaatc catayaatac yccartattt
481 gctataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aagagaactc aagayttctg ggaggtccaa ttaggaatac ctcatcccgc rggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat
661 gaaarcttta gaaartatac tgcattcact atacctagtg taaataatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccakc artatttcag
781 gcaagcatga yaaaaatctt agagcccttt agaasaaaaa atccagagat agtgatctac
841 caatatatgg atgatttata tgtaggatct gacttagaga taggrcaaca tagagcaaaa
901 atagaggagt taagrgaaca tctactgara tggggattta ccaccccaga caaaaagcat
961 cagaaagarc ccccatttct ttggatggga tatgagctcc atcctgacaa atggacagtc
1021 cagcctatac agctgccaga aaaagacagc tggactgtca atgatataca gaarttagtg
1081 ggaaarytaa attgggcaag tcaaatttat ccaggaatta aagtaaagca actrtgtaaa
1141 ctcctcaggg gagctaaagc actaacagat atagtrmcat tractgagga agcagartta
1201 gaattggcag aaaacaggga rattctaaaa gaacctgtac atggagtata ttatgaccca
1261 gcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022