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LOCUS	    JF323605		    1302 bp    RNA     linear	VRL 27-FEB-2011
DEFINITION  HIV-1 isolate GH081q2.7 from Ghana pol protein (pol) gene, partial
	    cds
ACCESSION   JF323605
VERSION     JF323605.1 GI:323710568
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
	    Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
	    Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
	    Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
	    African patients living in Italy.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
  PUBMED    21453131
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
	    Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
	    Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
	    Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2011) Experimental Medicine and Biochemical
	    Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
	    00133, Italy
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="GH081q2.7"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Ghana"
		     /collection_date="30-Nov-2005"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="PR_RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADY03160.1"
		     /db_xref="GI:323710569"
		     /translation="PQITLWQRPXVKVRIXGQLIEALLDTGADDTVLEEIXLPGKWKP
		     KMIGGIGGFIKVRQYDQILLEICGKXAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPXF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEXFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPXXFQASMXKILEPFRXKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLXWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
		     XLTEEAELELAENREILKEPVHGVYYDPAKDLIAEIQKQGQD"
BASE COUNT	506 a	 203 c	  263 g    295 t     35 other
ORIGIN
       1 cctcaaatca ctctttggca rcgaccckta gtcaargtaa gaatagrggg acagctaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataam tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 cagatacttc tagaaatttg tggaaaaarg gcyataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggrmg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaacagt gccagtaaaa ttgaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagagatg 
     421 gaaaargaag graaaatttc aaaaattggg cctgaaaatc catayaatac yccartattt 
     481 gctataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aagagaactc aagayttctg ggaggtccaa ttaggaatac ctcatcccgc rggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 gaaarcttta gaaartatac tgcattcact atacctagtg taaataatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccakc artatttcag 
     781 gcaagcatga yaaaaatctt agagcccttt agaasaaaaa atccagagat agtgatctac 
     841 caatatatgg atgatttata tgtaggatct gacttagaga taggrcaaca tagagcaaaa 
     901 atagaggagt taagrgaaca tctactgara tggggattta ccaccccaga caaaaagcat 
     961 cagaaagarc ccccatttct ttggatggga tatgagctcc atcctgacaa atggacagtc 
    1021 cagcctatac agctgccaga aaaagacagc tggactgtca atgatataca gaarttagtg 
    1081 ggaaarytaa attgggcaag tcaaatttat ccaggaatta aagtaaagca actrtgtaaa 
    1141 ctcctcaggg gagctaaagc actaacagat atagtrmcat tractgagga agcagartta 
    1201 gaattggcag aaaacaggga rattctaaaa gaacctgtac atggagtata ttatgaccca 
    1261 gcaaaagact taatagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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