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LOCUS	    JF323595		    1302 bp    RNA     linear	VRL 27-FEB-2011
DEFINITION  HIV-1 isolate NG006p0.1 from Nigeria pol protein (pol) gene,
	    partial cds
ACCESSION   JF323595
VERSION     JF323595.1 GI:323710548
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
	    Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
	    Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
	    Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
	    African patients living in Italy.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
  PUBMED    21453131
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
	    Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
	    Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
	    Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2011) Experimental Medicine and Biochemical
	    Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
	    00133, Italy
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="NG006p0.1"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Nigeria"
		     /collection_date="15-Jul-2008"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="PR_RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADY03150.1"
		     /db_xref="GI:323710549"
		     /translation="PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEEISLPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEICERRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICREMEKEGKISKIGPENPYNTPVF
		     AIKKKDXTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDPDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTNNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQHIELPDKDTWTVNDIQKLVGKLNWASQIYAGIXVKQLCKLLRGAKALTDXV
		     TLTEEAELELAENREJLKEPVHGXYYDPTKDLVAEIQKQGQD"
BASE COUNT	514 a	 206 c	  267 g    295 t     20 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa aaataggggg acagctaata 
      61 gaagcyctat tagacacagg agcagatgat acagtattag aagaaataag tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag rcaatatgat 
     181 cagataccta tagaaatttg tgaaagaagg gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaacygt gccagtaaaa ttaaarccag gaatggatgg yccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattga cagaaatttg tagagaaatg 
     421 gaaaaggaag gaaagatttc aaaaattgga cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatrg tactaaatgg agaaaattag tagatttyag ggaactcaat 
     541 aaaagaactc aagacttctg ggaggtccaa ttaggaattc ctcatccygc gggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 ccagacttca gaaagtatac tgcattcact atacctagta caaataatga aacaccaggg 
     721 attagatatc agtacaatgt gcttccacar ggatggaaag gatcaccagc aatatttcag 
     781 gcaagcatga caaaaatctt agagccyttt agaacaaaca atccagaaat agtgatctac 
     841 caatacatgg atgatttata tgtaggatct gacttagaga tagggcagca tagaacaaaa 
     901 atagaggagt taagagaaca tctrttaaag tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcatatag aactgccaga taaagacacc tggactgtca atgatataca gaaattagtg 
    1081 ggaaarctaa attgggcmag tcagatttat gcaggaatta ragtaaagca actgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat rtagtaacat tractgagga agcagartta 
    1201 gaattggcag araacaggga amttctaaaa gaacctgtac atggagyata ttatgaccca 
    1261 acaaaagact tagtagcaga gatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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