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LOCUS JF323595 1302 bp RNA linear VRL 27-FEB-2011
DEFINITION HIV-1 isolate NG006p0.1 from Nigeria pol protein (pol) gene,
partial cds
ACCESSION JF323595
VERSION JF323595.1 GI:323710548
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
African patients living in Italy.
JOURNAL AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
PUBMED 21453131
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2011) Experimental Medicine and Biochemical
Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
00133, Italy
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="NG006p0.1"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Nigeria"
/collection_date="15-Jul-2008"
/note="subtype: CRF02_AG"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="PR_RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADY03150.1"
/db_xref="GI:323710549"
/translation="PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEEISLPGKWKP
KMIGGIGGFIKVRQYDQIPIEICERRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICREMEKEGKISKIGPENPYNTPVF
AIKKKDXTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDPDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTNNPE
IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQHIELPDKDTWTVNDIQKLVGKLNWASQIYAGIXVKQLCKLLRGAKALTDXV
TLTEEAELELAENREJLKEPVHGXYYDPTKDLVAEIQKQGQD"
BASE COUNT 514 a 206 c 267 g 295 t 20 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa aaataggggg acagctaata
61 gaagcyctat tagacacagg agcagatgat acagtattag aagaaataag tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag rcaatatgat
181 cagataccta tagaaatttg tgaaagaagg gccataggta cagtattagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaacygt gccagtaaaa ttaaarccag gaatggatgg yccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattga cagaaatttg tagagaaatg
421 gaaaaggaag gaaagatttc aaaaattgga cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatrg tactaaatgg agaaaattag tagatttyag ggaactcaat
541 aaaagaactc aagacttctg ggaggtccaa ttaggaattc ctcatccygc gggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat
661 ccagacttca gaaagtatac tgcattcact atacctagta caaataatga aacaccaggg
721 attagatatc agtacaatgt gcttccacar ggatggaaag gatcaccagc aatatttcag
781 gcaagcatga caaaaatctt agagccyttt agaacaaaca atccagaaat agtgatctac
841 caatacatgg atgatttata tgtaggatct gacttagaga tagggcagca tagaacaaaa
901 atagaggagt taagagaaca tctrttaaag tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcatatag aactgccaga taaagacacc tggactgtca atgatataca gaaattagtg
1081 ggaaarctaa attgggcmag tcagatttat gcaggaatta ragtaaagca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat rtagtaacat tractgagga agcagartta
1201 gaattggcag araacaggga amttctaaaa gaacctgtac atggagyata ttatgaccca
1261 acaaaagact tagtagcaga gatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022