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LOCUS JF304746 1512 bp DNA linear VRL 21-FEB-2011
DEFINITION HIV-1 isolate BEC28 from USA gag protein (gag) gene, complete cds
ACCESSION JF304746
VERSION JF304746.1 GI:323473331
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1512)
Show all sequences for reference 1
AUTHORS Dahirel,V., Shekhar,K., Pereyra,F., Miura,T., Artyomov,M.,
Talsania,S., Allen,T.M., Altfeld,M., Carrington,M., Irvine,D.J.,
Walker,B.D. and Chakraborty,A.K.
TITLE Coordinate linkage of HIV evolution reveals regions of
immunological vulnerability.
JOURNAL Proc. Natl. Acad. Sci. U. S. A.. 108(28); 11530-5 (2011)
PUBMED 21690407
REFERENCE 2 (bases 1 to 1512)
Show all sequences for reference 2
AUTHORS Miura,T.
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2011) Division of Infectious Diseases, Advanced
Clinical Research Center, The Institute of Medical Science, The
University of Tokyo, 4-6-1 Shirokanedai Minatoku, Tokyo 108-8639,
Japan
FEATURES Location/Qualifiers
source 1..1512
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="BEC28"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/note="genotype: B"
gene 1..1503
/gene="gag"
CDS 1..1503
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ADX78236.1"
/db_xref="GI:323473332"
/translation="MGARASVLSGGELDRWEKIRLRPGGKKKYQLKHIVWASRELERF
AVNPGLLETSEGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVXDTKEALE
KIEEEQXKSKKKAQQAAADTGNKGQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
EKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPV
HAGPAAPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIIMGLNKIVRM
YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCRTIL
KALGPAATLEEMMTACQGVGGPSHKARVLAEAMXQASNSNVIMMQRGNYRNQRKSVKC
FNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFLQ
SRSEPTAPPEESFRFGEETPTPSXKQEXXDKELYPLASLRSLFGNDPSSQ"
BASE COUNT 556 a 288 c 374 g 282 t 12 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg
61 ttaaggccag gaggaaagaa aaaatatcaa ttaaaacata tagtatgggc aagcagggag
121 ctagaacgat tcgcagtcaa tcctggcctg ttagaaacct cagagggctg tagacaaata
181 ctggaacagc tacaaccagc ccttcagaca ggatcagaag aacttaaatc attatataat
241 acagtagcaa ccctctattg tgtacatcaa aagatagatg taamagacac caaggaagct
301 ttagagaaga tagaggaaga gcaaaycaaa agcaagaaaa aagcacagca agcagcagct
361 gacacaggaa acaagggcca ggtcagccaa aattacccta tagtgcagaa cctccagggg
421 caaatggtac aycaggccat atcacctaga actttaaatg catgggtgaa agtagtagaa
481 gagaaggctt tcagcccaga agtaataccc atgtttacag cattatcaga aggagccacc
541 ccacaagatt tgaacaccat gctaaacaca gtggggggac atcaggcagc catgcaaatg
601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gagtgcatcc agtgcatgca
661 gggcctgctg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact
721 agtacccttc aggaacaaat aggatggatg acaagtaatc cacctatccc agtaggagaa
781 atctataaaa gatggataat catgggatta aataaaatag taaggatgta tagccctacc
841 agtattctgg acataagaca aggaccaaag gaacccttta gagactatgt agaccggttc
901 tataaaactt taagagccga gcaagcttca caggatgtaa aaaattggat gacagaaacc
961 ttgttggtcc agaatgcgaa cccagattgt agaactattt taaaagcatt gggaccagca
1021 gctacactag aggaaatgat gacagcatgt cagggagtgg gaggacccag ccataaagca
1081 agagttttgg ctgaagcaat gaghcaagca tcaaattcaa atgtcataat gatgcagaga
1141 ggyaaytata ggaaccaaag aaagagtgtt aaatgyttca attgtggcaa agargggcac
1201 atagccaaaa attgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaggaagga
1261 caccaaatga aagattgtac tgagagacag gctaattttt tagggaaaat ctggccttcc
1321 aacaagggaa ggccagggaa ttttctccar agcagatcag agccaacagc cccaccagaa
1381 gagagcttca ggtttgggga agagacacca actccctctc mgaagcagga gamgayagac
1441 aaggaactgt atcctttagc ttccctcaga tcactctttg gcaacgaccc ctcgtctcaa
1501 taaagatagg gg
//
last modified: Tue May 31 10:56 2022