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LOCUS	    JF304746		    1512 bp    DNA     linear	VRL 21-FEB-2011
DEFINITION  HIV-1 isolate BEC28 from USA gag protein (gag) gene, complete cds
ACCESSION   JF304746
VERSION     JF304746.1 GI:323473331
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1512)
            Show all sequences for reference 1
  AUTHORS   Dahirel,V., Shekhar,K., Pereyra,F., Miura,T., Artyomov,M.,
	    Talsania,S., Allen,T.M., Altfeld,M., Carrington,M., Irvine,D.J.,
	    Walker,B.D. and Chakraborty,A.K.
  TITLE     Coordinate linkage of HIV evolution reveals regions of
	    immunological vulnerability.
  JOURNAL   Proc. Natl. Acad. Sci. U. S. A.. 108(28); 11530-5 (2011)
  PUBMED    21690407
REFERENCE   2 (bases 1 to 1512)
            Show all sequences for reference 2
  AUTHORS   Miura,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2011) Division of Infectious Diseases, Advanced
	    Clinical Research Center, The Institute of Medical Science, The
	    University of Tokyo, 4-6-1 Shirokanedai Minatoku, Tokyo 108-8639,
	    Japan
FEATURES             Location/Qualifiers
     source	     1..1512
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="BEC28"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="genotype: B"
     gene	     1..1503
		     /gene="gag"
     CDS	     1..1503
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ADX78236.1"
		     /db_xref="GI:323473332"
		     /translation="MGARASVLSGGELDRWEKIRLRPGGKKKYQLKHIVWASRELERF
		     AVNPGLLETSEGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVXDTKEALE
		     KIEEEQXKSKKKAQQAAADTGNKGQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
		     EKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPV
		     HAGPAAPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIIMGLNKIVRM
		     YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCRTIL
		     KALGPAATLEEMMTACQGVGGPSHKARVLAEAMXQASNSNVIMMQRGNYRNQRKSVKC
		     FNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFLQ
		     SRSEPTAPPEESFRFGEETPTPSXKQEXXDKELYPLASLRSLFGNDPSSQ"
BASE COUNT	556 a	 288 c	  374 g    282 t     12 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg 
      61 ttaaggccag gaggaaagaa aaaatatcaa ttaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagtcaa tcctggcctg ttagaaacct cagagggctg tagacaaata 
     181 ctggaacagc tacaaccagc ccttcagaca ggatcagaag aacttaaatc attatataat 
     241 acagtagcaa ccctctattg tgtacatcaa aagatagatg taamagacac caaggaagct 
     301 ttagagaaga tagaggaaga gcaaaycaaa agcaagaaaa aagcacagca agcagcagct 
     361 gacacaggaa acaagggcca ggtcagccaa aattacccta tagtgcagaa cctccagggg 
     421 caaatggtac aycaggccat atcacctaga actttaaatg catgggtgaa agtagtagaa 
     481 gagaaggctt tcagcccaga agtaataccc atgtttacag cattatcaga aggagccacc 
     541 ccacaagatt tgaacaccat gctaaacaca gtggggggac atcaggcagc catgcaaatg 
     601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gagtgcatcc agtgcatgca 
     661 gggcctgctg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact 
     721 agtacccttc aggaacaaat aggatggatg acaagtaatc cacctatccc agtaggagaa 
     781 atctataaaa gatggataat catgggatta aataaaatag taaggatgta tagccctacc 
     841 agtattctgg acataagaca aggaccaaag gaacccttta gagactatgt agaccggttc 
     901 tataaaactt taagagccga gcaagcttca caggatgtaa aaaattggat gacagaaacc 
     961 ttgttggtcc agaatgcgaa cccagattgt agaactattt taaaagcatt gggaccagca 
    1021 gctacactag aggaaatgat gacagcatgt cagggagtgg gaggacccag ccataaagca 
    1081 agagttttgg ctgaagcaat gaghcaagca tcaaattcaa atgtcataat gatgcagaga 
    1141 ggyaaytata ggaaccaaag aaagagtgtt aaatgyttca attgtggcaa agargggcac 
    1201 atagccaaaa attgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaggaagga 
    1261 caccaaatga aagattgtac tgagagacag gctaattttt tagggaaaat ctggccttcc 
    1321 aacaagggaa ggccagggaa ttttctccar agcagatcag agccaacagc cccaccagaa 
    1381 gagagcttca ggtttgggga agagacacca actccctctc mgaagcagga gamgayagac 
    1441 aaggaactgt atcctttagc ttccctcaga tcactctttg gcaacgaccc ctcgtctcaa 
    1501 taaagatagg gg
//
last modified: Tue May 31 10:56 2022


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