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LOCUS HQ993629 1380 bp DNA linear VRL 07-NOV-2011
DEFINITION UNVERIFIED: HIV-1 isolate CP076301591 from Kenya genomic sequence
ACCESSION HQ993629
VERSION HQ993629.1 GI:355337478
KEYWORDS UNVERIFIED.
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1380)
Show all sequences for reference 1
AUTHORS Hamers,R.L., Wallis,C.L., Kityo,C., Siwale,M., Mandaliya,K.,
Conradie,F., Botes,M.E., Wellington,M., Osibogun,A., Sigaloff,K.C.,
Nankya,I., Schuurman,R., Wit,F.W., Stevens,W.S., Van Vugt,M. and de
Wit,T.F.
CONSRTM for PharmAccess African Studies to Evaluate Resistance (PASER)
TITLE HIV-1 drug resistance in antiretroviral-naive individuals in
sub-Saharan Africa after rollout of antiretroviral therapy: a
multicentre observational study
JOURNAL Lancet Infect Dis 11 (10), 750-759 (2011)
PUBMED 21802367
REFERENCE 2 (bases 1 to 1380)
Show all sequences for reference 2
AUTHORS Hamers,R.L., Wallis,C., Kityo,C., Siwale,M., Conradie,F.,
Mandaliya,K., Botes,M., Wellington,M., Osibigun,A.,
Sigaloff,K.C.E., Schuurman,R., Stevens,W.S., Van Vugt,M. and Rinke
de Wit,T.F.
CONSRTM PharmAccess African Studies to Evaluate Resistance (PASER)
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2011) Amsterdam Institute for Global Health and
Development, PharmAccess Foundation, Pietersbergweg 17, Amsterdam,
NH 1105BM, The Netherlands
REFERENCE 3
Show all sequences for reference 3
AUTHORS Hamers,R.L., Schuurman,R., Sigaloff,K.C.E., Wallis,C.L., Kityo,C.,
Siwale,M., Mandaliya,K., Ive,P., Botes,M.E., Wellington,M.,
Osibogun,A., Wit,F.W., Van Vugt,M., Stevens,W.S. and De Wit,T.F.R.
CONSRTM PASER
TITLE Effect of pretreatment HIV-1 drug resistance on immunological,
virological, and drug-resistance outcomes of first-line
antiretroviral treatment in sub-Saharan Africa: a multicentre
cohort study.
JOURNAL Lancet. Infect. Dis.. 12(4); 307-17 (2012)
PUBMED 22036233
COMMENT GenBank staff is unable to verify sequence and/or annotation
provided by the submitter.
FEATURES Location/Qualifiers
source 1..1380
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CP076301591"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Kenya"
/note="collection date range 2007-2009"
BASE COUNT 520 a 236 c 297 g 307 t 20 other
ORIGIN
1 gactggaacc aacagcccca ccagcagaga tctgtgggat gagggaagag gcagcctccc
61 ctccgaagca gggggaacag actccacctt taatttccct caaatcactc tttggcagcg
121 acccgttgtc acaataaaaa tagggggaca gctgaaagaa gctctattag atacaggagc
181 agatgataca gtatttgaag acatagattt rccaggaaaa tggaaaccaa gaatgatagg
241 gggaattgga ggttttatca aagtaaaaca gtatgatcac atacctatag aaatttgtgg
301 aaaaaaggct ayaggtacag tattagtagg acctacacct gtcaacatag ttggaagraa
361 tatgttgacc cagattggat gcactttaaa tttcccaatt agtcctattg agactgtacc
421 agtaaaatta aagccaggaa tggatggccc aaaagttaaa caatggccat tgacagaaga
481 aaaaataaaa gcattaacag aaatttgttt agaaatggaa aaggagggaa arattacaaa
541 aattgggcct gaaaatccat acaacactcc aatatttgcc ataaagaaga aagacagtac
601 taartggaga aaattagtag atttcaggga actcaataaa agaactcaag acttttggga
661 agttcaatta gggataccac acccagcagg gttaaaaaag aaaaaatcag tgacagtact
721 rgatgtgggg gatgcrtatt tttcagttcc tttagataaa gatttcagga aatatactgc
781 attcaccata cctagtrtaa acaatgarac accaggmrtt agatatcagt ataatgtgct
841 tccacaggga tggaaaggat caccagcaat attycaaagt agcatgacaa aaatcttaga
901 gccctttaga aaacaaaatc cagaaatagt tatctatcaa tacatggatg atttgtatgt
961 aggatctgac ttagaaatag ggcaacatag agcaaaaata gaggagttaa gagarcatct
1021 attgargtgg ggattyacca cmccagacaa aaarcatcaa aaagaacctc catttctgtg
1081 gatggggtat gaactccatc ctgacaaatg gacrgtacag cctatacagc taccagaaaa
1141 rgatagctgg actgtcaatg atatacagaa gttagtggga aagttaaact gggcaagtca
1201 gatttaccca gggattcaag tgaagcagct gtgtagactc cttaggggag ccaargcctt
1261 aacagacata gtaccactga ctgaagaagc agaattagaa ttggcagaga acagggagat
1321 tctaagagaa ccagtacatg gagtatatta tgacccatca aaagacttaa tagcagaact
//
last modified: Tue May 31 10:56 2022