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LOCUS HQ864406 1328 bp RNA linear VRL 11-APR-2011
DEFINITION Human immunodeficiency virus isolate SK4047-PI pol protein (pol)
gene, partial cds
ACCESSION HQ864406
VERSION HQ864406.1 GI:325976639
KEYWORDS .
SOURCE Human immunodeficiency virus
ORGANISM Human immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 1328)
Show all sequences for reference 1
AUTHORS Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
and Peeters,M.
TITLE High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug
Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic
Diversity
JOURNAL J. Clin. Microbiol. 49 (4), 1635-1641 (2011)
PUBMED 21270223
REFERENCE 2 (bases 1 to 1328)
Show all sequences for reference 2
AUTHORS Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
and Peeters,M.
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2011) HIV-AIDS, Virology Laboratory
CREMER/IMPM/IRD, Rue Elig-Essono, Yaounde, Centre 1857, Cameroon
REFERENCE 3
Show all sequences for reference 3
AUTHORS Aghokeng,A.F., Kouanfack,C., Laurent,C., Ebong,E., Atem-Tambe,A.,
Butel,C., Montavon,C., Mpoudi-Ngole,E., Delaporte,E. and Peeters,M.
TITLE Scale-up of antiretroviral treatment in sub-Saharan Africa is
accompanied by increasing HIV-1 drug resistance mutations in
drug-naive patients
JOURNAL AIDS 25 (17), 2183-2188 (2011)
PUBMED 21860346
FEATURES Location/Qualifiers
source 1..1328
/organism="Human immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="SK4047-PI"
/host="Homo sapiens"
/db_xref="taxon:12721"
/country="Cameroon"
/collection_date="2007"
gene <1..>1328
/gene="pol"
CDS <1..>1328
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADZ48155.1"
/db_xref="GI:325976640"
/translation="GGRDSLLSEAGTEGQGNISSLNFPQITLWQRPXVTVRIEGQLIE
ALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYDQIXXEICGKRAIGTVLVGP
TPXNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEIC
AEMEXEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPH
PAGLKKKKSVTVLDVGDAYFSVPLDXXFRKYTAFTIPSVNNETPGVRYQYNVLPQGWK
GSPAIFQASMTKILEPFRAKNPEMVIYQYMDDLYVGSDLEIGQHRAKIEQLRDHLLKW
GFTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQLPEKDSWTVNDIQKLVGKLNWASQI
YAGIKVKQLCKLLRGAKALTDIVPLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT 512 a 219 c 273 g 290 t 34 other
ORIGIN
1 ggaggaagag acagcctcct ctctgaagca ggaaccgaag gacaagggaa tatatcctcc
61 cttaacttcc ctcaaatcac tctttggcaa cgaccmktag tcacagtaag aatagaggga
121 caactaatag aagcyctatt agatacagga gcagatgata cagtattaga agacataaat
181 ttaccaggaa artggaaacc aaaaatgata gggggaattg gaggttttat caaagtaaga
241 caatatgatc agatacytat rgaaatttgt ggaaaaagrg cmataggtac agtattagta
301 ggacctacac ctrtcaacat aattggacga aatatgttga cycagattgg ttgtacttta
361 aattttccaa ttagtcctat tgaaactgtg ccagtaaaat traagccagg aatggatggc
421 ccaaaagtta aacaatggcc attracagag gaaaaaataa aagcaytgac agaaatatgt
481 gcagagatgg aamaggaagg aaaaatttca aaaattgggc ctgaaaatcc atacaatact
541 ccagtatttg ccataaagaa aaargatagy actaaatgga gaaaattagt agatttcaga
601 gaactcaata aragaactca agacttctgg gaggtycaat taggaatacc ycatccygcg
661 ggaytaaaaa agaaaaaatc agtaacagta ctagatgtrg gggatgcata cttttcagtt
721 cccttagatr aagamtttag aaagtatact gcattcacta tacctagtgt aaataatgar
781 acaccagggg ttagatatca gtacaatgtr ctyccacagg gatggaaagg atcaccagca
841 atatttcagg caagcatgac aaaaatcyta gagcccttta gagcaaaaaa tccagagatg
901 gtratctacc aatacatgga tgatttatat gtaggrtctg acttagagat agggcagcac
961 agagcaaaaa tagarcagtt aagagaccat ctaytaaaat ggggatttac cacaccagac
1021 aagaaacatc agaaagaacc tccatttctt tggatgggat atgaactcca tcctgacaaa
1081 tggacagtcc agactataca gctaccagaa aaagacagct ggactgtcaa tgayatacag
1141 aaattagtgg gaaaactaaa ttgggcaagt cagatctatg caggaattaa agtaaagcaa
1201 ttgtgcaaac tcctcagggg agccaaagca ctaacagata tagtaccact gactgaggaa
1261 gcagaattag aattggcaga gaacagrgaa attctaaaag aacctgtaca tggagtatat
1321 tatgaccc
//
last modified: Tue May 31 10:56 2022