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LOCUS	    HQ864406		    1328 bp    RNA     linear	VRL 11-APR-2011
DEFINITION  Human immunodeficiency virus isolate SK4047-PI pol protein (pol)
	    gene, partial cds
ACCESSION   HQ864406
VERSION     HQ864406.1 GI:325976639
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 1328)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
	    and Peeters,M.
  TITLE     High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug
	    Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic
	    Diversity
  JOURNAL   J. Clin. Microbiol. 49 (4), 1635-1641 (2011)
  PUBMED    21270223
REFERENCE   2 (bases 1 to 1328)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
	    and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2011) HIV-AIDS, Virology Laboratory
	    CREMER/IMPM/IRD, Rue Elig-Essono, Yaounde, Centre 1857, Cameroon
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Laurent,C., Ebong,E., Atem-Tambe,A.,
	    Butel,C., Montavon,C., Mpoudi-Ngole,E., Delaporte,E. and Peeters,M.
  TITLE     Scale-up of antiretroviral treatment in sub-Saharan Africa is
	    accompanied by increasing HIV-1 drug resistance mutations in
	    drug-naive patients
  JOURNAL   AIDS 25 (17), 2183-2188 (2011)
  PUBMED    21860346
FEATURES             Location/Qualifiers
     source	     1..1328
		     /organism="Human immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="SK4047-PI"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="Cameroon"
		     /collection_date="2007"
     gene	     <1..>1328
		     /gene="pol"
     CDS	     <1..>1328
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADZ48155.1"
		     /db_xref="GI:325976640"
		     /translation="GGRDSLLSEAGTEGQGNISSLNFPQITLWQRPXVTVRIEGQLIE
		     ALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYDQIXXEICGKRAIGTVLVGP
		     TPXNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEIC
		     AEMEXEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPH
		     PAGLKKKKSVTVLDVGDAYFSVPLDXXFRKYTAFTIPSVNNETPGVRYQYNVLPQGWK
		     GSPAIFQASMTKILEPFRAKNPEMVIYQYMDDLYVGSDLEIGQHRAKIEQLRDHLLKW
		     GFTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQLPEKDSWTVNDIQKLVGKLNWASQI
		     YAGIKVKQLCKLLRGAKALTDIVPLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT	512 a	 219 c	  273 g    290 t     34 other
ORIGIN
       1 ggaggaagag acagcctcct ctctgaagca ggaaccgaag gacaagggaa tatatcctcc 
      61 cttaacttcc ctcaaatcac tctttggcaa cgaccmktag tcacagtaag aatagaggga 
     121 caactaatag aagcyctatt agatacagga gcagatgata cagtattaga agacataaat 
     181 ttaccaggaa artggaaacc aaaaatgata gggggaattg gaggttttat caaagtaaga 
     241 caatatgatc agatacytat rgaaatttgt ggaaaaagrg cmataggtac agtattagta 
     301 ggacctacac ctrtcaacat aattggacga aatatgttga cycagattgg ttgtacttta 
     361 aattttccaa ttagtcctat tgaaactgtg ccagtaaaat traagccagg aatggatggc 
     421 ccaaaagtta aacaatggcc attracagag gaaaaaataa aagcaytgac agaaatatgt 
     481 gcagagatgg aamaggaagg aaaaatttca aaaattgggc ctgaaaatcc atacaatact 
     541 ccagtatttg ccataaagaa aaargatagy actaaatgga gaaaattagt agatttcaga 
     601 gaactcaata aragaactca agacttctgg gaggtycaat taggaatacc ycatccygcg 
     661 ggaytaaaaa agaaaaaatc agtaacagta ctagatgtrg gggatgcata cttttcagtt 
     721 cccttagatr aagamtttag aaagtatact gcattcacta tacctagtgt aaataatgar 
     781 acaccagggg ttagatatca gtacaatgtr ctyccacagg gatggaaagg atcaccagca 
     841 atatttcagg caagcatgac aaaaatcyta gagcccttta gagcaaaaaa tccagagatg 
     901 gtratctacc aatacatgga tgatttatat gtaggrtctg acttagagat agggcagcac 
     961 agagcaaaaa tagarcagtt aagagaccat ctaytaaaat ggggatttac cacaccagac 
    1021 aagaaacatc agaaagaacc tccatttctt tggatgggat atgaactcca tcctgacaaa 
    1081 tggacagtcc agactataca gctaccagaa aaagacagct ggactgtcaa tgayatacag 
    1141 aaattagtgg gaaaactaaa ttgggcaagt cagatctatg caggaattaa agtaaagcaa 
    1201 ttgtgcaaac tcctcagggg agccaaagca ctaacagata tagtaccact gactgaggaa 
    1261 gcagaattag aattggcaga gaacagrgaa attctaaaag aacctgtaca tggagtatat 
    1321 tatgaccc
//
last modified: Tue May 31 10:56 2022


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