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LOCUS HQ864398 1340 bp RNA linear VRL 11-APR-2011
DEFINITION Human immunodeficiency virus isolate SK8026-PI pol protein (pol)
gene, partial cds
ACCESSION HQ864398
VERSION HQ864398.1 GI:325976623
KEYWORDS .
SOURCE Human immunodeficiency virus
ORGANISM Human immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 1340)
Show all sequences for reference 1
AUTHORS Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
and Peeters,M.
TITLE High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug
Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic
Diversity
JOURNAL J. Clin. Microbiol. 49 (4), 1635-1641 (2011)
PUBMED 21270223
REFERENCE 2 (bases 1 to 1340)
Show all sequences for reference 2
AUTHORS Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
and Peeters,M.
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2011) HIV-AIDS, Virology Laboratory
CREMER/IMPM/IRD, Rue Elig-Essono, Yaounde, Centre 1857, Cameroon
REFERENCE 3
Show all sequences for reference 3
AUTHORS Aghokeng,A.F., Kouanfack,C., Laurent,C., Ebong,E., Atem-Tambe,A.,
Butel,C., Montavon,C., Mpoudi-Ngole,E., Delaporte,E. and Peeters,M.
TITLE Scale-up of antiretroviral treatment in sub-Saharan Africa is
accompanied by increasing HIV-1 drug resistance mutations in
drug-naive patients
JOURNAL AIDS 25 (17), 2183-2188 (2011)
PUBMED 21860346
FEATURES Location/Qualifiers
source 1..1340
/organism="Human immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="SK8026-PI"
/host="Homo sapiens"
/db_xref="taxon:12721"
/country="Cameroon"
/collection_date="2007"
gene <1..>1340
/gene="pol"
CDS <1..>1340
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADZ48147.1"
/db_xref="GI:325976624"
/translation="GGRDTLRSKGGTEGRTEGQGTIPSFSFPQITLWQRPLVTVXIGE
QLIEALLDTGADDTVLEEIXLPGRWKPKMIGGIGGFIKVRQYDQXPIEICGKXXXGTV
LVGPTPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKAL
TDICXEMEKEGKISKXGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQL
GIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLP
QGWKGSPAIFQASMTKILEPFRTKNPEMVIYQYMDDLYVGSDLEIGQHRAKXEELREH
LLKWGXTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQLPEKDSWTVNDIQKLVGKLNW
ASQIYPGIKVKQLCRLLRGAKTLTEIVPLTKEAELELAENREILKEPVHGVYYDP"
BASE COUNT 515 a 220 c 281 g 298 t 26 other
ORIGIN
1 gggggaaggg ataccctccg ctccaaagga ggaaccgagg gaagaactga gggacaaggg
61 actataccct cctttagctt ccctcaaatc actctttggc arcgaccctt agtcacagta
121 araatagggg aacagytaat agaagctcta ttagacacag gagcagatga tacagtatta
181 gaagaaataa mtttaccagg aagatggaaa ccaaaaatga tagggggaat tggaggtttt
241 atcaaagtaa gacaatatga tcagrtacct atagaaattt gtggaaaaar rrctayaggy
301 acagtgttag taggacctac acctgtcaac ataattggac gaaacatgtt gactcagatt
361 ggttgtactc taaattttcc aattagtcct attgaaactg taccagtaaa attaaagcca
421 ggaatggatg gcccaaaggt taaacaatgg ccattgacag aagaaaaaat aaaagcatta
481 acagayattt gtmawgagat ggaaaaagaa ggaaaaattt caaaarttgg gcctgaaaat
541 ccatacaata ctccaatatt tgccataaag aaaaargata gtactaagtg gagaaaatta
601 gtagatttca gagaactcaa caaaagaact caagacttct gggaggtcca attaggaata
661 cctcatcccg caggattaaa aaagaaaaaa tcagtaacag tactagatgt gggggatgca
721 tatttttcag ttccyttaga tgaagacttt agaaagtata ctgcattcac yatacctagt
781 gtraataatg agacaccagg aattaggtat cagtacaatg tgcttccaca gggatggaaa
841 ggatcaccag caatatttca ggcaagtatg acaaaaatct tagagccctt tagaacaaaa
901 aatccagaaa tggtgatcta ccaatatatg gatgatttrt atgtaggatc tgacttagag
961 atagggcaac atagagcaaa artagaagag ttgagagaac atctattgaa atggggrytt
1021 accacaccag ayaaaaarca ycagaargaa cctccatttc tttggatggg atatgaactc
1081 catcctgaca aatggacagt ccagactata cagctgccag aaaaagacag ctggactgtc
1141 aatgatatac agaaattggt aggaaaacta aattgggcaa gtcagattta tccaggaatt
1201 aaagtaaaac aactatgtag actcctcagg ggagccaaaa cactgacaga aatagtacca
1261 ctgactaagg aagcagaatt agaattggca gagaacaggg aaattctaaa agaacctgta
1321 catggagtct attatgaccc
//
last modified: Tue May 31 10:56 2022