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LOCUS	    HQ864398		    1340 bp    RNA     linear	VRL 11-APR-2011
DEFINITION  Human immunodeficiency virus isolate SK8026-PI pol protein (pol)
	    gene, partial cds
ACCESSION   HQ864398
VERSION     HQ864398.1 GI:325976623
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 1340)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
	    and Peeters,M.
  TITLE     High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug
	    Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic
	    Diversity
  JOURNAL   J. Clin. Microbiol. 49 (4), 1635-1641 (2011)
  PUBMED    21270223
REFERENCE   2 (bases 1 to 1340)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
	    and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2011) HIV-AIDS, Virology Laboratory
	    CREMER/IMPM/IRD, Rue Elig-Essono, Yaounde, Centre 1857, Cameroon
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Laurent,C., Ebong,E., Atem-Tambe,A.,
	    Butel,C., Montavon,C., Mpoudi-Ngole,E., Delaporte,E. and Peeters,M.
  TITLE     Scale-up of antiretroviral treatment in sub-Saharan Africa is
	    accompanied by increasing HIV-1 drug resistance mutations in
	    drug-naive patients
  JOURNAL   AIDS 25 (17), 2183-2188 (2011)
  PUBMED    21860346
FEATURES             Location/Qualifiers
     source	     1..1340
		     /organism="Human immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="SK8026-PI"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="Cameroon"
		     /collection_date="2007"
     gene	     <1..>1340
		     /gene="pol"
     CDS	     <1..>1340
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADZ48147.1"
		     /db_xref="GI:325976624"
		     /translation="GGRDTLRSKGGTEGRTEGQGTIPSFSFPQITLWQRPLVTVXIGE
		     QLIEALLDTGADDTVLEEIXLPGRWKPKMIGGIGGFIKVRQYDQXPIEICGKXXXGTV
		     LVGPTPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKAL
		     TDICXEMEKEGKISKXGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQL
		     GIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLP
		     QGWKGSPAIFQASMTKILEPFRTKNPEMVIYQYMDDLYVGSDLEIGQHRAKXEELREH
		     LLKWGXTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQLPEKDSWTVNDIQKLVGKLNW
		     ASQIYPGIKVKQLCRLLRGAKTLTEIVPLTKEAELELAENREILKEPVHGVYYDP"
BASE COUNT	515 a	 220 c	  281 g    298 t     26 other
ORIGIN
       1 gggggaaggg ataccctccg ctccaaagga ggaaccgagg gaagaactga gggacaaggg 
      61 actataccct cctttagctt ccctcaaatc actctttggc arcgaccctt agtcacagta 
     121 araatagggg aacagytaat agaagctcta ttagacacag gagcagatga tacagtatta 
     181 gaagaaataa mtttaccagg aagatggaaa ccaaaaatga tagggggaat tggaggtttt 
     241 atcaaagtaa gacaatatga tcagrtacct atagaaattt gtggaaaaar rrctayaggy 
     301 acagtgttag taggacctac acctgtcaac ataattggac gaaacatgtt gactcagatt 
     361 ggttgtactc taaattttcc aattagtcct attgaaactg taccagtaaa attaaagcca 
     421 ggaatggatg gcccaaaggt taaacaatgg ccattgacag aagaaaaaat aaaagcatta 
     481 acagayattt gtmawgagat ggaaaaagaa ggaaaaattt caaaarttgg gcctgaaaat 
     541 ccatacaata ctccaatatt tgccataaag aaaaargata gtactaagtg gagaaaatta 
     601 gtagatttca gagaactcaa caaaagaact caagacttct gggaggtcca attaggaata 
     661 cctcatcccg caggattaaa aaagaaaaaa tcagtaacag tactagatgt gggggatgca 
     721 tatttttcag ttccyttaga tgaagacttt agaaagtata ctgcattcac yatacctagt 
     781 gtraataatg agacaccagg aattaggtat cagtacaatg tgcttccaca gggatggaaa 
     841 ggatcaccag caatatttca ggcaagtatg acaaaaatct tagagccctt tagaacaaaa 
     901 aatccagaaa tggtgatcta ccaatatatg gatgatttrt atgtaggatc tgacttagag 
     961 atagggcaac atagagcaaa artagaagag ttgagagaac atctattgaa atggggrytt 
    1021 accacaccag ayaaaaarca ycagaargaa cctccatttc tttggatggg atatgaactc 
    1081 catcctgaca aatggacagt ccagactata cagctgccag aaaaagacag ctggactgtc 
    1141 aatgatatac agaaattggt aggaaaacta aattgggcaa gtcagattta tccaggaatt 
    1201 aaagtaaaac aactatgtag actcctcagg ggagccaaaa cactgacaga aatagtacca 
    1261 ctgactaagg aagcagaatt agaattggca gagaacaggg aaattctaaa agaacctgta 
    1321 catggagtct attatgaccc 
//
last modified: Tue May 31 10:56 2022


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