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LOCUS HQ864349 1328 bp RNA linear VRL 11-APR-2011
DEFINITION Human immunodeficiency virus isolate SK5026-PI pol protein (pol)
gene, partial cds
ACCESSION HQ864349
VERSION HQ864349.1 GI:325976525
KEYWORDS .
SOURCE Human immunodeficiency virus
ORGANISM Human immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 1328)
Show all sequences for reference 1
AUTHORS Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
and Peeters,M.
TITLE High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug
Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic
Diversity
JOURNAL J. Clin. Microbiol. 49 (4), 1635-1641 (2011)
PUBMED 21270223
REFERENCE 2 (bases 1 to 1328)
Show all sequences for reference 2
AUTHORS Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
and Peeters,M.
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2011) HIV-AIDS, Virology Laboratory
CREMER/IMPM/IRD, Rue Elig-Essono, Yaounde, Centre 1857, Cameroon
REFERENCE 3
Show all sequences for reference 3
AUTHORS Aghokeng,A.F., Kouanfack,C., Laurent,C., Ebong,E., Atem-Tambe,A.,
Butel,C., Montavon,C., Mpoudi-Ngole,E., Delaporte,E. and Peeters,M.
TITLE Scale-up of antiretroviral treatment in sub-Saharan Africa is
accompanied by increasing HIV-1 drug resistance mutations in
drug-naive patients
JOURNAL AIDS 25 (17), 2183-2188 (2011)
PUBMED 21860346
COMMENT This sequence is partially derived from CRF02, and partially
derived from subsubtype F2.
FEATURES Location/Qualifiers
source 1..1328
/organism="Human immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="SK5026-PI"
/host="Homo sapiens"
/db_xref="taxon:12721"
/country="Cameroon"
/collection_date="2007"
gene <1..>1328
/gene="pol"
CDS <1..>1328
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADZ48098.1"
/db_xref="GI:325976526"
/translation="GGRDNLLSEAGPGGQGTISSLNFPQITLWQRPIVTVRIGGQXIE
ALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYDQILXEICGXRAIGTVLVGP
TPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEIC
TEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPH
PAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWK
GSPAIFQSSMTKILEPFRXKNPEIIIYQYMDDLYVGSDLEIGQHRTKXEELRXHLLXW
GFTTPDKKHQKEPPFLWMGYELHPDKWTVQAIQLPEKDSWTVNDIQKLVGKLNWASQI
YPGIRVKXLCKLLRGTKALTDVVTLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT 500 a 213 c 288 g 302 t 25 other
ORIGIN
1 gggggaagag acaacctcct ctctgaagca ggaccagggg gacaagggac tatatcctcc
61 cttaacttcc ctcaaatcac tctttggcaa cgacccatag tcacagtaag aataggggga
121 cagcyaatag aagccctatt agacacagga gcrgatgata cagtattaga agayataaat
181 ttaccaggaa aatggaaacc aaaaatgata gggggaattg gaggttttat caaagtaaga
241 cagtatgatc agatactgrt agaaatttgt ggamaaaggg ccataggtac agtaytagta
301 ggacctacac ctgtcaatat aattggacga aatatgttga ctcarattgg ttgtacttta
361 aattttccaa ttagtcctat tgaaactgtg ccagtgaaat taaagccagg aatggatggc
421 ccaaaagtta aacaatggcc attracagaa gaaaaaataa aagcattaac agaaatttgt
481 acagagatgg agaaggargg aaaaatttca aarattgggc cagaaaatcc atayaatact
541 ccagtatttg cyataaagaa aaaagatagc actaaatgga gaaaattagt agatttcaga
601 gaactcaata aaagaactca agatttttgg gaggttcaat taggaatacc acacccggca
661 gggttaaaaa agaagaaatc agtaacagta ttggatgtgg gggatgcata tttttcagtt
721 cccttagata aggagtttag aaagtatact gcattcacca tacctagtac aaataatgag
781 acaccaggra tcaggtatca gtacaatgtg cttccacaag gatggaaagg rtcaccggca
841 atattccaga gtagcatgac aaaaatctta gagcccttta garcaaaaaa tccagaaata
901 attatctacc aatacatgga tgatttgtat gtagggtctg acttagagat agggcarcat
961 agracaaaar tagaagagtt aagavaacat ctgttgarht ggggatttac tacaccagat
1021 aaaaaacatc agaargaacc cccatttctt tggatggggt atgaactcca tcctgacaaa
1081 tggacagtac aggctataca gttgccagaa aaagacagct ggactgtcaa tgatatacag
1141 aagttagtgg gaaaactaaa ttgggcaagt cagatttatc cagggattag agtaaagyac
1201 ttatgtaagc tcctcagggg aaccaaagca ctracrgatg tagtaacact gactgaggaa
1261 gcagaattag aattggcaga aaacagggag attctaaaag aacctgtaca tggagtatat
1321 tatgaccc
//
last modified: Tue May 31 10:56 2022