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LOCUS	    HQ864349		    1328 bp    RNA     linear	VRL 11-APR-2011
DEFINITION  Human immunodeficiency virus isolate SK5026-PI pol protein (pol)
	    gene, partial cds
ACCESSION   HQ864349
VERSION     HQ864349.1 GI:325976525
KEYWORDS    .
SOURCE	    Human immunodeficiency virus
  ORGANISM  Human immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 1328)
            Show all sequences for reference 1
  AUTHORS   Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
	    and Peeters,M.
  TITLE     High Failure Rate of the ViroSeq HIV-1 Genotyping System for Drug
	    Resistance Testing in Cameroon, a Country with Broad HIV-1 Genetic
	    Diversity
  JOURNAL   J. Clin. Microbiol. 49 (4), 1635-1641 (2011)
  PUBMED    21270223
REFERENCE   2 (bases 1 to 1328)
            Show all sequences for reference 2
  AUTHORS   Aghokeng,A.F., Mpoudi-Ngole,E., Chia,J.E., Edoul,E.M., Delaporte,E.
	    and Peeters,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2011) HIV-AIDS, Virology Laboratory
	    CREMER/IMPM/IRD, Rue Elig-Essono, Yaounde, Centre 1857, Cameroon
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Aghokeng,A.F., Kouanfack,C., Laurent,C., Ebong,E., Atem-Tambe,A.,
	    Butel,C., Montavon,C., Mpoudi-Ngole,E., Delaporte,E. and Peeters,M.
  TITLE     Scale-up of antiretroviral treatment in sub-Saharan Africa is
	    accompanied by increasing HIV-1 drug resistance mutations in
	    drug-naive patients
  JOURNAL   AIDS 25 (17), 2183-2188 (2011)
  PUBMED    21860346
COMMENT     This sequence is partially derived from CRF02, and partially
	    derived from subsubtype F2.
FEATURES             Location/Qualifiers
     source	     1..1328
		     /organism="Human immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="SK5026-PI"
		     /host="Homo sapiens"
		     /db_xref="taxon:12721"
		     /country="Cameroon"
		     /collection_date="2007"
     gene	     <1..>1328
		     /gene="pol"
     CDS	     <1..>1328
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADZ48098.1"
		     /db_xref="GI:325976526"
		     /translation="GGRDNLLSEAGPGGQGTISSLNFPQITLWQRPIVTVRIGGQXIE
		     ALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYDQILXEICGXRAIGTVLVGP
		     TPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEIC
		     TEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPH
		     PAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWK
		     GSPAIFQSSMTKILEPFRXKNPEIIIYQYMDDLYVGSDLEIGQHRTKXEELRXHLLXW
		     GFTTPDKKHQKEPPFLWMGYELHPDKWTVQAIQLPEKDSWTVNDIQKLVGKLNWASQI
		     YPGIRVKXLCKLLRGTKALTDVVTLTEEAELELAENREILKEPVHGVYYDP"
BASE COUNT	500 a	 213 c	  288 g    302 t     25 other
ORIGIN
       1 gggggaagag acaacctcct ctctgaagca ggaccagggg gacaagggac tatatcctcc 
      61 cttaacttcc ctcaaatcac tctttggcaa cgacccatag tcacagtaag aataggggga 
     121 cagcyaatag aagccctatt agacacagga gcrgatgata cagtattaga agayataaat 
     181 ttaccaggaa aatggaaacc aaaaatgata gggggaattg gaggttttat caaagtaaga 
     241 cagtatgatc agatactgrt agaaatttgt ggamaaaggg ccataggtac agtaytagta 
     301 ggacctacac ctgtcaatat aattggacga aatatgttga ctcarattgg ttgtacttta 
     361 aattttccaa ttagtcctat tgaaactgtg ccagtgaaat taaagccagg aatggatggc 
     421 ccaaaagtta aacaatggcc attracagaa gaaaaaataa aagcattaac agaaatttgt 
     481 acagagatgg agaaggargg aaaaatttca aarattgggc cagaaaatcc atayaatact 
     541 ccagtatttg cyataaagaa aaaagatagc actaaatgga gaaaattagt agatttcaga 
     601 gaactcaata aaagaactca agatttttgg gaggttcaat taggaatacc acacccggca 
     661 gggttaaaaa agaagaaatc agtaacagta ttggatgtgg gggatgcata tttttcagtt 
     721 cccttagata aggagtttag aaagtatact gcattcacca tacctagtac aaataatgag 
     781 acaccaggra tcaggtatca gtacaatgtg cttccacaag gatggaaagg rtcaccggca 
     841 atattccaga gtagcatgac aaaaatctta gagcccttta garcaaaaaa tccagaaata 
     901 attatctacc aatacatgga tgatttgtat gtagggtctg acttagagat agggcarcat 
     961 agracaaaar tagaagagtt aagavaacat ctgttgarht ggggatttac tacaccagat 
    1021 aaaaaacatc agaargaacc cccatttctt tggatggggt atgaactcca tcctgacaaa 
    1081 tggacagtac aggctataca gttgccagaa aaagacagct ggactgtcaa tgatatacag 
    1141 aagttagtgg gaaaactaaa ttgggcaagt cagatttatc cagggattag agtaaagyac 
    1201 ttatgtaagc tcctcagggg aaccaaagca ctracrgatg tagtaacact gactgaggaa 
    1261 gcagaattag aattggcaga aaacagggag attctaaaag aacctgtaca tggagtatat 
    1321 tatgaccc
//
last modified: Tue May 31 10:56 2022


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