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LOCUS	    HQ858090		     843 bp    RNA     linear	VRL 21-NOV-2011
DEFINITION  HIV-1 isolate RW56_M_CA_3 from Rwanda envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   HQ858090
VERSION     HQ858090.1 GI:318103895
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 843)
            Show all sequences for reference 1
  AUTHORS   Boeras,D.I., Hraber,P.T., Hurlston,M., Evans-Strickfaden,T.,
	    Bhattacharya,T., Giorgi,E.E., Mulenga,J., Karita,E., Korber,B.T.,
	    Allen,S., Hart,C.E., Derdeyn,C.A. and Hunter,E.
  TITLE     Role of donor genital tract HIV-1 diversity in the transmission
	    bottleneck
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 108 (46), E1156-E1163 (2011)
  PUBMED    22065783
REFERENCE   2 (bases 1 to 843)
            Show all sequences for reference 2
  AUTHORS   Boeras,D., Hraber,P., Hurlston,M., Mulenga,J., Karita,E.,
	    Korber,B., Giorgi,E., Bhattacharya,T., Hart,C., Allen,S.,
	    Derdeyn,C. and Hunter,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2011) Emory Vaccine Center, Emory University, 954
	    Gatewood Road, Atlanta, GA 30329, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name RW56_M_CA_3 Patient code
	    RW56M Sample tissue Cell-associated virus Patient sex M
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..843
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="RW56_M_CA_3"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Rwanda"
		     /collection_date="23-Aug-2005"
		     /note="donor in heterosexual transmission pair subtype:
		     A1"
     gene	     <1..>843
		     /gene="env"
     CDS	     <1..>843
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADV40982.1"
		     /db_xref="GI:318103896"
		     /translation="CGEVNKSTNTNNTTVESKVEEIKNCSFNVTTEIRDKKQKVYALF
		     YRLDIVPLSNGNSNENISEYILINCNTSAVSQACPKVSFDPIPIHYCAPAGYAILKCN
		     NKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENITSNVKTIIVQ
		     LNNSVEIKCTRPGNNTRKSIRIGPGQTFYATGEIIGDIRQAHCNLSRNLWSETLSQIR
		     NKLSKYFPNRTITFNSASGGDLEITTHSFNCGGEFFYCNTSGLFNTSLFNDTNTTNST
		     LTLPC"
BASE COUNT	335 a	 147 c	  144 g    217 t
ORIGIN
       1 tgtggtgagg ttaacaaaag cactaatacc aataatacta ctgtcgaaag taaggtggaa 
      61 gaaataaaaa attgttcttt caatgtaacc acagaaataa gagataagaa acagaaggta 
     121 tatgcacttt tttatagact tgatatagta ccacttagca atggaaatag taatgaaaat 
     181 attagtgaat atatattaat aaattgtaat acctcagccg tatcacaggc ctgtccaaaa 
     241 gtctcttttg acccaattcc tatacattat tgtgctccag cgggttatgc gattctaaag 
     301 tgtaacaata aaacattcaa tggaacagga ccatgcaata atgtcagcac agtacaatgt 
     361 acacatggaa ttaagccagt ggtatcaact caactactgt taaatggtag tctagcagaa 
     421 gaagagataa taatcagatc tgaaaatata accagcaatg tcaaaacaat aatagtacag 
     481 cttaataact ctgtagaaat taagtgtacg agacctggca ataatacaag aaaaagtata 
     541 aggataggac caggacaaac attctatgca acaggagaaa taataggaga tataagacaa 
     601 gctcattgta acctcagtag gaacctgtgg agtgaaacct tatcccagat aagaaataaa 
     661 ttatcaaagt acttccctaa tagaaccata actttcaatt cagcctcagg aggggaccta 
     721 gaaattacaa cacatagttt taattgtgga ggagaatttt tctactgcaa tacatcaggc 
     781 ctatttaata caagcctgtt taatgatact aataccacaa acagcacact cacactccca 
     841 tgc
//
last modified: Tue May 31 10:56 2022


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