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LOCUS HQ858090 843 bp RNA linear VRL 21-NOV-2011
DEFINITION HIV-1 isolate RW56_M_CA_3 from Rwanda envelope glycoprotein (env)
gene, partial cds
ACCESSION HQ858090
VERSION HQ858090.1 GI:318103895
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 843)
Show all sequences for reference 1
AUTHORS Boeras,D.I., Hraber,P.T., Hurlston,M., Evans-Strickfaden,T.,
Bhattacharya,T., Giorgi,E.E., Mulenga,J., Karita,E., Korber,B.T.,
Allen,S., Hart,C.E., Derdeyn,C.A. and Hunter,E.
TITLE Role of donor genital tract HIV-1 diversity in the transmission
bottleneck
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 108 (46), E1156-E1163 (2011)
PUBMED 22065783
REFERENCE 2 (bases 1 to 843)
Show all sequences for reference 2
AUTHORS Boeras,D., Hraber,P., Hurlston,M., Mulenga,J., Karita,E.,
Korber,B., Giorgi,E., Bhattacharya,T., Hart,C., Allen,S.,
Derdeyn,C. and Hunter,E.
TITLE Direct Submission
JOURNAL Submitted (07-JAN-2011) Emory Vaccine Center, Emory University, 954
Gatewood Road, Atlanta, GA 30329, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name RW56_M_CA_3 Patient code
RW56M Sample tissue Cell-associated virus Patient sex M
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..843
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="RW56_M_CA_3"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Rwanda"
/collection_date="23-Aug-2005"
/note="donor in heterosexual transmission pair subtype:
A1"
gene <1..>843
/gene="env"
CDS <1..>843
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADV40982.1"
/db_xref="GI:318103896"
/translation="CGEVNKSTNTNNTTVESKVEEIKNCSFNVTTEIRDKKQKVYALF
YRLDIVPLSNGNSNENISEYILINCNTSAVSQACPKVSFDPIPIHYCAPAGYAILKCN
NKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENITSNVKTIIVQ
LNNSVEIKCTRPGNNTRKSIRIGPGQTFYATGEIIGDIRQAHCNLSRNLWSETLSQIR
NKLSKYFPNRTITFNSASGGDLEITTHSFNCGGEFFYCNTSGLFNTSLFNDTNTTNST
LTLPC"
BASE COUNT 335 a 147 c 144 g 217 t
ORIGIN
1 tgtggtgagg ttaacaaaag cactaatacc aataatacta ctgtcgaaag taaggtggaa
61 gaaataaaaa attgttcttt caatgtaacc acagaaataa gagataagaa acagaaggta
121 tatgcacttt tttatagact tgatatagta ccacttagca atggaaatag taatgaaaat
181 attagtgaat atatattaat aaattgtaat acctcagccg tatcacaggc ctgtccaaaa
241 gtctcttttg acccaattcc tatacattat tgtgctccag cgggttatgc gattctaaag
301 tgtaacaata aaacattcaa tggaacagga ccatgcaata atgtcagcac agtacaatgt
361 acacatggaa ttaagccagt ggtatcaact caactactgt taaatggtag tctagcagaa
421 gaagagataa taatcagatc tgaaaatata accagcaatg tcaaaacaat aatagtacag
481 cttaataact ctgtagaaat taagtgtacg agacctggca ataatacaag aaaaagtata
541 aggataggac caggacaaac attctatgca acaggagaaa taataggaga tataagacaa
601 gctcattgta acctcagtag gaacctgtgg agtgaaacct tatcccagat aagaaataaa
661 ttatcaaagt acttccctaa tagaaccata actttcaatt cagcctcagg aggggaccta
721 gaaattacaa cacatagttt taattgtgga ggagaatttt tctactgcaa tacatcaggc
781 ctatttaata caagcctgtt taatgatact aataccacaa acagcacact cacactccca
841 tgc
//
last modified: Tue May 31 10:56 2022