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LOCUS	    HQ858072		     834 bp    RNA     linear	VRL 21-NOV-2011
DEFINITION  HIV-1 isolate RW36_F_SW_11 from Rwanda envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   HQ858072
VERSION     HQ858072.1 GI:318103860
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 834)
            Show all sequences for reference 1
  AUTHORS   Boeras,D.I., Hraber,P.T., Hurlston,M., Evans-Strickfaden,T.,
	    Bhattacharya,T., Giorgi,E.E., Mulenga,J., Karita,E., Korber,B.T.,
	    Allen,S., Hart,C.E., Derdeyn,C.A. and Hunter,E.
  TITLE     Role of donor genital tract HIV-1 diversity in the transmission
	    bottleneck
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 108 (46), E1156-E1163 (2011)
  PUBMED    22065783
REFERENCE   2 (bases 1 to 834)
            Show all sequences for reference 2
  AUTHORS   Boeras,D., Hraber,P., Hurlston,M., Mulenga,J., Karita,E.,
	    Korber,B., Giorgi,E., Bhattacharya,T., Hart,C., Allen,S.,
	    Derdeyn,C. and Hunter,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2011) Emory Vaccine Center, Emory University, 954
	    Gatewood Road, Atlanta, GA 30329, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name RW36_F_SW_11 Patient code
	    RW36F Sample tissue Swab-associated virus Patient sex F
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..834
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="RW36_F_SW_11"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Rwanda"
		     /collection_date="07-Mar-2005"
		     /note="donor in heterosexual transmission pair subtype:
		     A1"
     gene	     <1..>834
		     /gene="env"
     CDS	     <1..>834
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADV40965.1"
		     /db_xref="GI:318103861"
		     /translation="CNDTNGNVTDREEVKNCTYNVTTELRDKRQNVRSLFYKLDIVPI
		     DENENNKTCNRTYRLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGT
		     GPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITDNAKTIIVQFHEAVEI
		     NCTRPNNNTRKSVRIGPGQAFYATGIIGDIRKAYCTVNRTDWNKALHEVAKKLITYFN
		     KTKIAFRHSSGGDLEITTHSFNCGGEFFYCNTSELFNSTWNSTDNIQGSNSTEGNITL
		     PC"
BASE COUNT	327 a	 137 c	  157 g    213 t
ORIGIN
       1 tgtaacgata ccaatggcaa tgtcacggat agggaagaag taaaaaactg cacttacaat 
      61 gtgaccacag aattaaggga taaaagacag aatgtgcgtt cactttttta taaacttgat 
     121 atagtgccaa ttgatgaaaa tgaaaataat aagacatgta atagaacgta tagattaata 
     181 aattgtaata cctcagtcat tacacaggct tgtccaaagg tatcttttga gccaattccc 
     241 atacattatt gtgccccagc tggttttgcg atcctaaagt gtaataataa gacattcaat 
     301 ggaacagggc catgcaataa tgtcagcaca gtacaatgca cacatggaat caagccagta 
     361 gtgtcaaccc aactgctgtt gaatggcagt ctagcagaag aagaggtaat aattagatct 
     421 gaaaatatca cagataatgc caaaactata atagtacaat ttcatgaggc tgtagaaatt 
     481 aattgtacta gacctaacaa caatacaaga aaaagtgtac gtataggacc aggacaagca 
     541 ttctatgcaa caggtataat aggggatata agaaaagcat attgtactgt caatagaaca 
     601 gactggaata aagctttaca tgaggtagct aaaaaattaa taacatattt taacaaaaca 
     661 aaaatagcct ttagacattc ttcaggaggg gatctagaaa tcacaacgca tagttttaat 
     721 tgtggaggag aatttttcta ttgtaataca tcagaactat ttaatagcac ttggaatagc 
     781 actgacaaca tacagggatc aaacagcacg gagggcaata taactctccc atgc
//
last modified: Tue May 31 10:56 2022


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