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LOCUS HQ537798 850 bp DNA linear VRL 16-NOV-2010
DEFINITION HIV-1 clone EN_COT02c from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HQ537798
VERSION HQ537798.1 GI:312162890
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 850)
Show all sequences for reference 1
AUTHORS Scaduto,D.I., Brown,J.M., Haaland,W.C., Zwickl,D.J., Hillis,D.M.
and Metzker,M.L.
TITLE Inaugural Article: Source identification in two criminal cases
using phylogenetic analysis of HIV-1 DNA sequences.
JOURNAL Proc Natl Acad Sci U S A. 2010 Nov 15.
PUBMED 21078965
REFERENCE 2 (bases 1 to 850)
Show all sequences for reference 2
AUTHORS Haaland,W.C. and Metzker,M.L.
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2010) Human Genome Sequencing Center, Baylor
College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
FEATURES Location/Qualifiers
source 1..850
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="EN_COT02c"
/country="USA"
/collection_date="2004"
gene <1..>850
/gene="env"
CDS <1..>850
/gene="env"
/note="gp120"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADQ37407.1"
/db_xref="GI:312162891"
/translation="IPKCRDKKFEGKGPCNNVNTVQCTHGIRPVVSTQLLLNGSLAEE
EVVIRSDNFTNNAKSIIVQLNESVEINCTRPSNNTRKGLHIGPGGAFYATGEVTGDIR
QAHCNISSEKWNNTLNQIVKKLREKFTNKTIVFTHSSGGDPEIVMHTFNCGGEFFYCN
LTQLFNSTWTTEGSNTTTYPNGTITLPCRIKQIINMWQEVGEAMYAPPIKGQIRCSSN
ITGLILTRDGGKNNITNDTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTQAKRR
VVQREKR"
BASE COUNT 348 a 132 c 176 g 194 t
ORIGIN
1 gattccaaag tgtagagata agaagttcga aggaaaagga ccatgtaaca atgtcaacac
61 agtacaatgt acacatggaa ttaggccagt agtgtcaact caactgctgt taaatggcag
121 tctagcagaa gaagaggtag taattagatc tgacaatttc acaaacaatg ctaaaagcat
181 aatagtacag ctgaatgaat ctgtagaaat taattgtaca agacccagca acaatacaag
241 aaaaggtcta catataggac cagggggagc attttatgca acaggagaag taacaggaga
301 tataagacaa gcacattgta acattagtag tgaaaaatgg aataacactt taaatcagat
361 agttaaaaaa ttaagagaaa aatttactaa caaaacaata gtctttactc actcctcagg
421 aggggaccca gaaattgtaa tgcacacttt taattgtgga ggggagtttt tctactgtaa
481 tttaacacaa ctgtttaata gtacttggac tactgaagga tcaaatacaa caacttaccc
541 taatggaact attactctcc catgcagaat aaaacaaatt ataaacatgt ggcaggaggt
601 aggagaagca atgtatgccc ctcccatcaa aggacaaatt agatgttcat caaatattac
661 agggctgata ttaacaagag atggtggtaa gaacaacatt accaacgata cagagatctt
721 cagacctgga ggaggagata tgagggacaa ttggagaagt gaattatata aatataaagt
781 agtaaaaatt gaaccattag gagtagcacc cacccaggca aagagaagag tggtgcaaag
841 agaaaaaaga
//
last modified: Tue May 31 10:56 2022