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LOCUS	    HQ528602		     288 bp    RNA     linear	VRL 29-NOV-2010
DEFINITION  HIV-1 isolate 09002314 from USA pol protein (pol) gene, partial cds
ACCESSION   HQ528602
VERSION     HQ528602.1 GI:312603654
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 288)
            Show all sequences for reference 1
  AUTHORS   Jain,V. and Spotts,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2010) Medicine - SFGH - Positive Health Program,
	    University of California San Francisco (UCSF), 995 Potrero Avenue,
	    4th Floor, San Francisco, CA 94110, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Jain,V., Sucupira,M.C., Bacchetti,P., Hartogensis,W., Diaz,R.S.,
	    Kallas,E.G., Janini,L.M., Liegler,T., Pilcher,C.D., Grant,R.M.,
	    Cortes,R., Deeks,S.G. and Hecht,F.M.
  TITLE     Differential Persistence of Transmitted HIV-1 Drug Resistance
	    Mutation Classes
  JOURNAL   J. Infect. Dis. 203 (8), 1174-1181 (2011)
  PUBMED    21451005
FEATURES             Location/Qualifiers
     source	     1..288
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="09002314"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="06-Jan-2009"
     gene	     <1..>288
		     /gene="pol"
     CDS	     <1..>288
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADQ92912.1"
		     /db_xref="GI:312603655"
		     /translation="TLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGKWKPKMI
		     GGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF"
BASE COUNT	109 a	  43 c	   64 g     72 t
ORIGIN
       1 actctttggc aacgacccct cgtcacaata aaagtagggg ggcaactaaa ggaagctcta 
      61 ttagatacag gagcagatga tacagtatta gaagaaatga atttgccagg aaaatggaaa 
     121 ccaaaaatga tagggggaat tggaggtttt atcaaagtaa gacagtatga tcagatactc 
     181 atagaaatat gtggacataa agctataggt acagtattag taggacctac acctgtcaac 
     241 ataattggaa gaaatctatt gacccagatt ggttgcactt taaatttt
//
last modified: Tue May 31 10:56 2022


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