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LOCUS	    HQ528586		     288 bp    RNA     linear	VRL 29-NOV-2010
DEFINITION  HIV-1 isolate 08004766 from USA pol protein (pol) gene, partial cds
ACCESSION   HQ528586
VERSION     HQ528586.1 GI:312603622
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 288)
            Show all sequences for reference 1
  AUTHORS   Jain,V. and Spotts,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2010) Medicine - SFGH - Positive Health Program,
	    University of California San Francisco (UCSF), 995 Potrero Avenue,
	    4th Floor, San Francisco, CA 94110, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Jain,V., Sucupira,M.C., Bacchetti,P., Hartogensis,W., Diaz,R.S.,
	    Kallas,E.G., Janini,L.M., Liegler,T., Pilcher,C.D., Grant,R.M.,
	    Cortes,R., Deeks,S.G. and Hecht,F.M.
  TITLE     Differential Persistence of Transmitted HIV-1 Drug Resistance
	    Mutation Classes
  JOURNAL   J. Infect. Dis. 203 (8), 1174-1181 (2011)
  PUBMED    21451005
FEATURES             Location/Qualifiers
     source	     1..288
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="08004766"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="23-Jan-2001"
     gene	     <1..>288
		     /gene="pol"
     CDS	     <1..>288
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADQ92896.1"
		     /db_xref="GI:312603623"
		     /translation="TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMI
		     GGIGGFIKVKQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF"
BASE COUNT	107 a	  45 c	   65 g     71 t
ORIGIN
       1 actctttggc aacgacccct cgtcacaata aagatagggg ggcaactaaa ggaagctcta 
      61 ttagatacag gagcagatga tacagtatta gaagaaatga atttgccagg aagatggaaa 
     121 ccaaaaatga tagggggaat tggaggtttt atcaaagtaa agcagtatga tcagataccc 
     181 atagaaatct gtggacataa agctataggt acagtattaa taggacctac acctgtcaac 
     241 ataattggaa gaaatctgtt gactcagatt ggttgcacct taaatttt
//
last modified: Tue May 31 10:56 2022


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