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LOCUS	    HQ528582		     288 bp    RNA     linear	VRL 29-NOV-2010
DEFINITION  HIV-1 isolate 08004761 from USA pol protein (pol) gene, partial cds
ACCESSION   HQ528582
VERSION     HQ528582.1 GI:312603614
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 288)
            Show all sequences for reference 1
  AUTHORS   Jain,V. and Spotts,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2010) Medicine - SFGH - Positive Health Program,
	    University of California San Francisco (UCSF), 995 Potrero Avenue,
	    4th Floor, San Francisco, CA 94110, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Jain,V., Sucupira,M.C., Bacchetti,P., Hartogensis,W., Diaz,R.S.,
	    Kallas,E.G., Janini,L.M., Liegler,T., Pilcher,C.D., Grant,R.M.,
	    Cortes,R., Deeks,S.G. and Hecht,F.M.
  TITLE     Differential Persistence of Transmitted HIV-1 Drug Resistance
	    Mutation Classes
  JOURNAL   J. Infect. Dis. 203 (8), 1174-1181 (2011)
  PUBMED    21451005
FEATURES             Location/Qualifiers
     source	     1..288
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="08004761"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="12-Jan-2007"
     gene	     <1..>288
		     /gene="pol"
     CDS	     <1..>288
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADQ92892.1"
		     /db_xref="GI:312603615"
		     /translation="TLWQRPLVTIKIGGQLKEALLDTGADNTVFEEMSLPGKWKPKMI
		     GGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRDLLTQLGCTLNF"
BASE COUNT	103 a	  46 c	   67 g     72 t
ORIGIN
       1 actctttggc aacgacccct cgtcacaata aagatagggg ggcaactaaa ggaagctcta 
      61 ttagatacag gagcagataa tacagtattt gaagaaatga gtttgccagg gaaatggaaa 
     121 ccaaaaatga tagggggaat tggaggtttt atcaaagtaa gacagtatga tcaggtaccc 
     181 atagaaatct gtggacataa agctataggt acagtattaa taggacctac acctgtcaac 
     241 ataattggaa gagatctgtt gactcagctt ggttgcacct taaatttt
//
last modified: Tue May 31 10:56 2022


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