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LOCUS HQ426805 999 bp DNA linear VRL 08-AUG-2011
DEFINITION HIV-1 isolate CBL08281090 from Spain polyprotein (pol) gene,
partial cds
ACCESSION HQ426805
VERSION HQ426805.1 GI:342358500
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 999)
Show all sequences for reference 1
AUTHORS de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
TITLE Drug resistance prevalence and HIV-1 variant characterization in
the naive and pretreated HIV-1-infected paediatric population in
Madrid, Spain.
JOURNAL J Antimicrob Chemother. 2011 Aug 2.
PUBMED 21810838
REFERENCE 2 (bases 1 to 999)
Show all sequences for reference 2
AUTHORS De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
Mellado,M.J., Rojo,P. and Ramos,J.T.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
28034, Spain
REFERENCE 3
Show all sequences for reference 3
AUTHORS Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
TITLE Clinical Determinants of HIV-1B Between-Host Evolution and their
Association with Drug Resistance in Pediatric Patients.
JOURNAL PLoS. One.. 11(12); e0167383 (2016)
PUBMED 27907076
FEATURES Location/Qualifiers
source 1..999
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CBL08281090"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="1993"
/note="subtype: B"
gene <1..>999
/gene="pol"
CDS <1..>999
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="AEL29335.1"
/db_xref="GI:342358501"
/translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEMSLPGRWKP
KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYDP"
mat_peptide <1..297
/gene="pol"
/product="protease"
mat_peptide 298..>999
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 388 a 163 c 209 g 239 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaaataaag
61 gaagctctac tagatacagg agcagatgat acagtattag aggagatgag tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc cctataatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtagggtct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac taaggcaaca tctgctgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatggga tatgaccct
//
last modified: Tue May 31 10:56 2022