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LOCUS	    HQ426805		     999 bp    DNA     linear	VRL 08-AUG-2011
DEFINITION  HIV-1 isolate CBL08281090 from Spain polyprotein (pol) gene,
	    partial cds
ACCESSION   HQ426805
VERSION     HQ426805.1 GI:342358500
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 999)
            Show all sequences for reference 1
  AUTHORS   de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
	    Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
  TITLE     Drug resistance prevalence and HIV-1 variant characterization in
	    the naive and pretreated HIV-1-infected paediatric population in
	    Madrid, Spain.
  JOURNAL   J Antimicrob Chemother. 2011 Aug 2.
  PUBMED    21810838
REFERENCE   2 (bases 1 to 999)
            Show all sequences for reference 2
  AUTHORS   De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
	    Mellado,M.J., Rojo,P. and Ramos,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
	    Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
	    28034, Spain
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
  TITLE     Clinical Determinants of HIV-1B Between-Host Evolution and their
	    Association with Drug Resistance in Pediatric Patients.
  JOURNAL   PLoS. One.. 11(12); e0167383 (2016)
  PUBMED    27907076
FEATURES             Location/Qualifiers
     source	     1..999
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CBL08281090"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="1993"
		     /note="subtype: B"
     gene	     <1..>999
		     /gene="pol"
     CDS	     <1..>999
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="AEL29335.1"
		     /db_xref="GI:342358501"
		     /translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEMSLPGRWKP
		     KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYDP"
     mat_peptide     <1..297
		     /gene="pol"
		     /product="protease"
     mat_peptide     298..>999
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	388 a	 163 c	  209 g    239 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaaataaag 
      61 gaagctctac tagatacagg agcagatgat acagtattag aggagatgag tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatactca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc cctataatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtagggtct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac taaggcaaca tctgctgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatggga tatgaccct
//
last modified: Tue May 31 10:56 2022


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