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LOCUS	    HQ426768		    1299 bp    DNA     linear	VRL 08-AUG-2011
DEFINITION  HIV-1 isolate MSC12081198 from Spain polyprotein (pol) gene,
	    partial cds
ACCESSION   HQ426768
VERSION     HQ426768.1 GI:342358426
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1299)
            Show all sequences for reference 1
  AUTHORS   de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
	    Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
  TITLE     Drug resistance prevalence and HIV-1 variant characterization in
	    the naive and pretreated HIV-1-infected paediatric population in
	    Madrid, Spain.
  JOURNAL   J Antimicrob Chemother. 2011 Aug 2.
  PUBMED    21810838
REFERENCE   2 (bases 1 to 1299)
            Show all sequences for reference 2
  AUTHORS   De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
	    Mellado,M.J., Rojo,P. and Ramos,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
	    Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
	    28034, Spain
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
  TITLE     Clinical Determinants of HIV-1B Between-Host Evolution and their
	    Association with Drug Resistance in Pediatric Patients.
  JOURNAL   PLoS. One.. 11(12); e0167383 (2016)
  PUBMED    27907076
FEATURES             Location/Qualifiers
     source	     1..1299
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="MSC12081198"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2002"
		     /note="subtype: B"
     gene	     <1..>1299
		     /gene="pol"
     CDS	     <1..>1299
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="AEL29298.1"
		     /db_xref="GI:342358427"
		     /translation="PQITLWQRPLVTIKIEGQLKEALLDTGADDTVLEDINLPGRWKP
		     KMIGGIGGFIKVRQYDQVAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSGP
		     LDKDFRKYTAFTIPSLNIETPGIRYQSNVLPQGWKGSPSIFQGSMTKFLEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVV
		     PLTQEAELELAENREILKEPVQGWFYDPSKDLIAEIQKQGE"
     mat_peptide     <1..297
		     /gene="pol"
		     /product="protease"
     mat_peptide     298..>1299
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	505 a	 212 c	  284 g    298 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agatagaggg gcagctaaag 
      61 gaagctctat tagacacagg agcagatgat acagtattag aagacataaa tttgccaggg 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcagtatgat 
     181 caggtagcca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgtacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacagtggc cactgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaataggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaagttag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaggttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt attggatgtg ggtgatgcat atttttcagg gcctttagat 
     661 aaagacttca gaaagtacac tgcatttacc atacctagtt taaacattga gacaccggga 
     721 attagatatc agtccaatgt gcttccacag ggatggaaag gatcgccatc aatattccaa 
     781 ggtagcatga caaaattctt agagcctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgaag tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgagctcc atcctgataa atggacagta 
    1021 cagcccatag tgctaccaga aaaggacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca gttatgtaaa 
    1141 ctccttaggg gaaccaaagc attaacagaa gtagtaccac taacacaaga agcagagcta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac aggggtggtt ttatgaccca 
    1261 tcaaaagatt taatagcaga aatacagaag cagggggaa
//
last modified: Tue May 31 10:56 2022


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