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LOCUS HQ426768 1299 bp DNA linear VRL 08-AUG-2011
DEFINITION HIV-1 isolate MSC12081198 from Spain polyprotein (pol) gene,
partial cds
ACCESSION HQ426768
VERSION HQ426768.1 GI:342358426
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1299)
Show all sequences for reference 1
AUTHORS de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
TITLE Drug resistance prevalence and HIV-1 variant characterization in
the naive and pretreated HIV-1-infected paediatric population in
Madrid, Spain.
JOURNAL J Antimicrob Chemother. 2011 Aug 2.
PUBMED 21810838
REFERENCE 2 (bases 1 to 1299)
Show all sequences for reference 2
AUTHORS De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
Mellado,M.J., Rojo,P. and Ramos,J.T.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
28034, Spain
REFERENCE 3
Show all sequences for reference 3
AUTHORS Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
TITLE Clinical Determinants of HIV-1B Between-Host Evolution and their
Association with Drug Resistance in Pediatric Patients.
JOURNAL PLoS. One.. 11(12); e0167383 (2016)
PUBMED 27907076
FEATURES Location/Qualifiers
source 1..1299
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="MSC12081198"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2002"
/note="subtype: B"
gene <1..>1299
/gene="pol"
CDS <1..>1299
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="AEL29298.1"
/db_xref="GI:342358427"
/translation="PQITLWQRPLVTIKIEGQLKEALLDTGADDTVLEDINLPGRWKP
KMIGGIGGFIKVRQYDQVAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSGP
LDKDFRKYTAFTIPSLNIETPGIRYQSNVLPQGWKGSPSIFQGSMTKFLEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVV
PLTQEAELELAENREILKEPVQGWFYDPSKDLIAEIQKQGE"
mat_peptide <1..297
/gene="pol"
/product="protease"
mat_peptide 298..>1299
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 505 a 212 c 284 g 298 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agatagaggg gcagctaaag
61 gaagctctat tagacacagg agcagatgat acagtattag aagacataaa tttgccaggg
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcagtatgat
181 caggtagcca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgtacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacagtggc cactgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaataggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaagttag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaggttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt attggatgtg ggtgatgcat atttttcagg gcctttagat
661 aaagacttca gaaagtacac tgcatttacc atacctagtt taaacattga gacaccggga
721 attagatatc agtccaatgt gcttccacag ggatggaaag gatcgccatc aatattccaa
781 ggtagcatga caaaattctt agagcctttt agaaaacaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgaag tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgagctcc atcctgataa atggacagta
1021 cagcccatag tgctaccaga aaaggacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca gttatgtaaa
1141 ctccttaggg gaaccaaagc attaacagaa gtagtaccac taacacaaga agcagagcta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac aggggtggtt ttatgaccca
1261 tcaaaagatt taatagcaga aatacagaag cagggggaa
//
last modified: Tue May 31 10:56 2022