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LOCUS HQ426753 955 bp DNA linear VRL 08-AUG-2011
DEFINITION HIV-1 isolate TSR12290396 from Spain polyprotein (pol) gene,
partial cds
ACCESSION HQ426753
VERSION HQ426753.1 GI:342358396
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 955)
Show all sequences for reference 1
AUTHORS de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
TITLE Drug resistance prevalence and HIV-1 variant characterization in
the naive and pretreated HIV-1-infected paediatric population in
Madrid, Spain.
JOURNAL J Antimicrob Chemother. 2011 Aug 2.
PUBMED 21810838
REFERENCE 2 (bases 1 to 955)
Show all sequences for reference 2
AUTHORS De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
Mellado,M.J., Rojo,P. and Ramos,J.T.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
28034, Spain
REFERENCE 3
Show all sequences for reference 3
AUTHORS Rojas Sanchez,P., Cobos,A., Navaro,M., Ramos,J.T., Pagan,I. and
Holguin,A.
TITLE Impact of Clinical Parameters in the Intrahost Evolution of HIV-1
Subtype B in Pediatric Patients: A Machine Learning Approach.
JOURNAL Genome. Biol. Evol.. 9(10); 2715-2726 (2017)
PUBMED 29044435
FEATURES Location/Qualifiers
source 1..955
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="TSR12290396"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2006"
/note="subtype: B"
gene <1..>955
/gene="pol"
CDS <1..>955
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="AEL29283.1"
/db_xref="GI:342358397"
/translation="PQITLWQRPIITIKVGGQVMEALLDTGADDTVLEEVNLPGRWKP
KMIGGIGGFVKVREYDQXPIEICGHKIVGTVLVGPTPANIIGRNLMTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPD
IVIYQYXDDLYVGSDLEIGQHRTKIEELRQHLWKWGFYTPDK"
mat_peptide <1..297
/gene="pol"
/product="protease"
mat_peptide 298..>955
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 370 a 150 c 205 g 227 t 3 other
ORIGIN
1 cctcagatca ctctttggca acgacccatc atcacaataa aagtaggggg gcaggtaatg
61 gaagctctat tagatacagg agcagatgat acagtattag aagaagtaaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggttttg tcaaagtaag agaataygat
181 cagrtaccca tagaaatctg tgggcataaa attgtaggta cagtattagt aggacctaca
241 cctgccaaca taattggaag aaatctgatg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaagatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatgg tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaag
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccctagat
661 gaaaacttca ggaaatatac tgcatttacc atacctagtt taaacaatga gacaccaggg
721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc gatattccaa
781 agtagcatga taaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacrtgg atgatttgta tgtaggctct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacagca tctgtggaag tgggggtttt acacaccaga taaaa
//
last modified: Tue May 31 10:56 2022