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LOCUS	    HQ426753		     955 bp    DNA     linear	VRL 08-AUG-2011
DEFINITION  HIV-1 isolate TSR12290396 from Spain polyprotein (pol) gene,
	    partial cds
ACCESSION   HQ426753
VERSION     HQ426753.1 GI:342358396
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 955)
            Show all sequences for reference 1
  AUTHORS   de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
	    Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
  TITLE     Drug resistance prevalence and HIV-1 variant characterization in
	    the naive and pretreated HIV-1-infected paediatric population in
	    Madrid, Spain.
  JOURNAL   J Antimicrob Chemother. 2011 Aug 2.
  PUBMED    21810838
REFERENCE   2 (bases 1 to 955)
            Show all sequences for reference 2
  AUTHORS   De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
	    Mellado,M.J., Rojo,P. and Ramos,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
	    Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
	    28034, Spain
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Rojas Sanchez,P., Cobos,A., Navaro,M., Ramos,J.T., Pagan,I. and
	    Holguin,A.
  TITLE     Impact of Clinical Parameters in the Intrahost Evolution of HIV-1
	    Subtype B in Pediatric Patients: A Machine Learning Approach.
  JOURNAL   Genome. Biol. Evol.. 9(10); 2715-2726 (2017)
  PUBMED    29044435
FEATURES             Location/Qualifiers
     source	     1..955
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="TSR12290396"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2006"
		     /note="subtype: B"
     gene	     <1..>955
		     /gene="pol"
     CDS	     <1..>955
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="AEL29283.1"
		     /db_xref="GI:342358397"
		     /translation="PQITLWQRPIITIKVGGQVMEALLDTGADDTVLEEVNLPGRWKP
		     KMIGGIGGFVKVREYDQXPIEICGHKIVGTVLVGPTPANIIGRNLMTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPD
		     IVIYQYXDDLYVGSDLEIGQHRTKIEELRQHLWKWGFYTPDK"
     mat_peptide     <1..297
		     /gene="pol"
		     /product="protease"
     mat_peptide     298..>955
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	370 a	 150 c	  205 g    227 t      3 other
ORIGIN
       1 cctcagatca ctctttggca acgacccatc atcacaataa aagtaggggg gcaggtaatg 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaagtaaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggttttg tcaaagtaag agaataygat 
     181 cagrtaccca tagaaatctg tgggcataaa attgtaggta cagtattagt aggacctaca 
     241 cctgccaaca taattggaag aaatctgatg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaagatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatgg tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaag 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccctagat 
     661 gaaaacttca ggaaatatac tgcatttacc atacctagtt taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc gatattccaa 
     781 agtagcatga taaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacrtgg atgatttgta tgtaggctct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacagca tctgtggaag tgggggtttt acacaccaga taaaa
//
last modified: Tue May 31 10:56 2022


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