HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HQ385454		    2574 bp    RNA     linear	VRL 04-NOV-2010
DEFINITION  HIV-1 isolate N004445 from Gambia envelope glycoprotein (env) gene,
	    complete cds
ACCESSION   HQ385454
VERSION     HQ385454.1 GI:310975659
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2574)
            Show all sequences for reference 1
  AUTHORS   de Silva,T.I., Turner,R., Hue,S., Trikha,R., Van Tienen,C.,
	    Onyango,C., Jaye,A., Foley,B., Whittle,H., Rowland-Jones,S.L. and
	    Cotten,M.
  TITLE     HIV-1 subtype distribution in the Gambia and the significant
	    presence of CRF49_cpx, a novel circulating recombinant form
  JOURNAL   Retrovirology 7 (1), 82 (2010)
  PUBMED    20932333
REFERENCE   2 (bases 1 to 2574)
            Show all sequences for reference 2
  AUTHORS   de Silva,T.I., Turner,R., Trikha,R., Onyango,C. and Cotten,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2010) Viral Diseases Programme, MRC Laboratories
	    (UK) The Gambia, Atlantic Road, Fajara PO Box 273, The Gambia
FEATURES             Location/Qualifiers
     source	     1..2574
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="N004445"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Gambia"
		     /collection_date="1999"
		     /note="subtype: CRF02_AG"
     gene	     1..2574
		     /gene="env"
     CDS	     1..2574
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADP55176.1"
		     /db_xref="GI:310975660"
		     /translation="MRVRGIQKNYPLLWRWGIICGIMIICNAEQLWVTVYYGVPVWKE
		     ADTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMHLKNVTENFNMWKNNMVEQMH
		     ADIISLWDQSLQPCVKLTPLCVTLNCRNVSTSNVSTSNVTSNINVTSNIKGEMTNCSF
		     NMTTEIRDKKQKVYSLFYKLDVVPINNTTDEYILINCNTSAITQACPKVSFEPIPIHY
		     CAPAGFAILKCKDKKFKGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEGVVIRSE
		     NISNNAKTIIVQLDEPVSINCARPSNNTRKSWRIGPGQTFYATGDIIGDIRQAHCNVS
		     RREWNKTLHKVATQLRTQLNITRIIFANHSGGDLEITTHSFNCRGEFFYCYTSNLFNS
		     TWDDNSTWDNNTTWDNSTTEDTNITLQCRIKQIVNMWQRVGQAIYAPPIQGDIKCESN
		     ITGLLLTRDGENNTMNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTHAKRRVVE
		     REKRAVGLGAVLFGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHL
		     LKLTVWGIKQLQARVLALERYLQDQQLLGIWGCSGKLICTTTVPWNSSWSNKTYNDIW
		     GNMTWLQWDKEISNYTRIIYDLIEESQNQQEINEQDLLALDKWASLWNWFDISKWLWY
		     IKIFIMIVGGLIGLRIVFAVLTIINRVRQGYSPLSFQTLTPHQREPDRPGRIEEGGGE
		     QDRDRSVRLVSGFFAIAWDDLRSLCLFSYHRLRDLVLIAVRAVELLGRSSLKGLRLGW
		     GLLSYWGQELKNSAITLLDTIAIAVANWTDSIIELGQRAGRAILNIPRRIRQGFERSL
		     L"
BASE COUNT	895 a	 467 c	  594 g    618 t
ORIGIN
       1 atgagagtga gggggataca gaagaattat ccactcttat ggagatgggg cataatatgt 
      61 gggataatga taatttgtaa tgctgaacag ttgtgggtca cggtctacta tggggtacct 
     121 gtatggaaag aagcagatac caccctattt tgtgcatcag atgctaaggc atatgataca 
     181 gaagtacata atgtctgggc tacacatgcc tgtgtaccca cagaccctaa cccacaagaa 
     241 atgcatttga aaaatgtaac agaaaacttt aacatgtgga aaaataacat ggtagagcag 
     301 atgcatgcag atataattag tctatgggac caaagcctac agccatgtgt aaagttaacc 
     361 cctctctgtg ttactttaaa ctgccgcaat gtcagcacct ccaatgtcag cacctccaat 
     421 gtcacgagta acataaatgt cacgagtaac ataaaaggag aaatgacaaa ctgctcgttc 
     481 aatatgacca cagaaataag agataagaaa cagaaagtat attcactttt ttataaactt 
     541 gatgtagtac caattaataa tacgacagat gagtatatac taataaattg taatacttca 
     601 gccattacac aggcttgtcc aaaggtatcc tttgagccaa ttcccataca ttattgtgcc 
     661 ccagctggtt ttgcgattct aaaatgtaag gataaaaaat tcaagggaac agggccatgc 
     721 aagaatgtca gcacagtaca atgcacacat ggaatcaagc cagtagtatc aactcaactg 
     781 ttgttaaatg gcagtctagc agaagaaggg gtagtgatta gatctgaaaa tatctcaaac 
     841 aatgccaaaa ccataatagt acagttggat gagcctgtaa gcattaattg tgccaggcct 
     901 agcaacaata caagaaaaag ttggcgtata ggaccaggac aaacattcta tgcaacaggt 
     961 gacataatag gggatataag acaagcacat tgtaatgtca gtagaagaga atggaataaa 
    1021 actttacaca aggtagctac acaattaagg acgcaactaa atatcacaag aataatcttt 
    1081 gctaaccact caggagggga tttagaaatc acaacacata gttttaattg tagaggagaa 
    1141 tttttctatt gctacacatc aaacctgttt aacagtactt gggatgacaa cagtacttgg 
    1201 gataacaata ctacttggga taacagcacg acagaggaca ccaacataac tctccaatgc 
    1261 aggataaagc aaattgtaaa tatgtggcag agagtaggac aagcaatata tgcccctccc 
    1321 atccaaggag acataaagtg tgaatcaaac attactggat tattgttaac aagagatgga 
    1381 gagaataata ctatgaatga gactttcagg cctggaggag gagacatgag ggacaattgg 
    1441 agaagtgaat tatataaata taaagtagta aaaattgaac cactaggtgt agcacccacc 
    1501 catgcaaaaa gaagagtggt ggagagagaa aaaagagcag ttggactagg agctgtcctc 
    1561 tttgggttct taggagcagc aggaagcact atgggcgcgg cgtcaataac gctgacggta 
    1621 caggccagac aattattgtc tggtatagtg caacagcaga gcaatttgct gaaggctata 
    1681 gaggctcaac aacatctgtt gaaactcacg gtctggggca ttaaacagct ccaggcaaga 
    1741 gtcctggctc tggaaagata cctacaagat caacagctcc taggaatttg gggctgctct 
    1801 ggaaaactca tctgcaccac tactgtaccc tggaactcta gttggagcaa taaaacttat 
    1861 aatgacatat ggggaaacat gacctggctg caatgggata aagaaattag caattacaca 
    1921 agaatcatat atgatctaat tgaggaatcg cagaatcagc aggaaattaa tgaacaagac 
    1981 ttattggcat tggacaagtg ggcaagcttg tggaattggt ttgacatatc aaaatggctg 
    2041 tggtatataa aaatatttat aatgatagta ggaggcttga taggtttaag aatagttttt 
    2101 gctgtgctta ctataataaa tagagttagg cagggatact cacctttgtc gttccagacc 
    2161 cttacccccc accagaggga acccgacagg cccggaagaa tcgaagaagg aggtggcgag 
    2221 caagacagag acagatctgt gcgattagtg agcggattct tcgcgattgc ctgggacgat 
    2281 ctgaggagcc tgtgcctttt cagctaccac cgattgagag acttagtctt gattgcagtg 
    2341 agggctgtgg aacttctggg acgcagcagt ctcaagggac tgagactggg gtggggtctt 
    2401 ctatcatact ggggtcagga actaaagaat agtgccatta ctttgcttga tacaatagca 
    2461 atagcagtag ctaactggac agacagcatt atagaactag gacaaagagc tggtagagct 
    2521 attctcaaca tacctagaag aatcagacag ggcttcgaaa ggtctttgct ataa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health