View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS HQ385454 2574 bp RNA linear VRL 04-NOV-2010
DEFINITION HIV-1 isolate N004445 from Gambia envelope glycoprotein (env) gene,
complete cds
ACCESSION HQ385454
VERSION HQ385454.1 GI:310975659
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2574)
Show all sequences for reference 1
AUTHORS de Silva,T.I., Turner,R., Hue,S., Trikha,R., Van Tienen,C.,
Onyango,C., Jaye,A., Foley,B., Whittle,H., Rowland-Jones,S.L. and
Cotten,M.
TITLE HIV-1 subtype distribution in the Gambia and the significant
presence of CRF49_cpx, a novel circulating recombinant form
JOURNAL Retrovirology 7 (1), 82 (2010)
PUBMED 20932333
REFERENCE 2 (bases 1 to 2574)
Show all sequences for reference 2
AUTHORS de Silva,T.I., Turner,R., Trikha,R., Onyango,C. and Cotten,M.
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2010) Viral Diseases Programme, MRC Laboratories
(UK) The Gambia, Atlantic Road, Fajara PO Box 273, The Gambia
FEATURES Location/Qualifiers
source 1..2574
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="N004445"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Gambia"
/collection_date="1999"
/note="subtype: CRF02_AG"
gene 1..2574
/gene="env"
CDS 1..2574
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADP55176.1"
/db_xref="GI:310975660"
/translation="MRVRGIQKNYPLLWRWGIICGIMIICNAEQLWVTVYYGVPVWKE
ADTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMHLKNVTENFNMWKNNMVEQMH
ADIISLWDQSLQPCVKLTPLCVTLNCRNVSTSNVSTSNVTSNINVTSNIKGEMTNCSF
NMTTEIRDKKQKVYSLFYKLDVVPINNTTDEYILINCNTSAITQACPKVSFEPIPIHY
CAPAGFAILKCKDKKFKGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEGVVIRSE
NISNNAKTIIVQLDEPVSINCARPSNNTRKSWRIGPGQTFYATGDIIGDIRQAHCNVS
RREWNKTLHKVATQLRTQLNITRIIFANHSGGDLEITTHSFNCRGEFFYCYTSNLFNS
TWDDNSTWDNNTTWDNSTTEDTNITLQCRIKQIVNMWQRVGQAIYAPPIQGDIKCESN
ITGLLLTRDGENNTMNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTHAKRRVVE
REKRAVGLGAVLFGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHL
LKLTVWGIKQLQARVLALERYLQDQQLLGIWGCSGKLICTTTVPWNSSWSNKTYNDIW
GNMTWLQWDKEISNYTRIIYDLIEESQNQQEINEQDLLALDKWASLWNWFDISKWLWY
IKIFIMIVGGLIGLRIVFAVLTIINRVRQGYSPLSFQTLTPHQREPDRPGRIEEGGGE
QDRDRSVRLVSGFFAIAWDDLRSLCLFSYHRLRDLVLIAVRAVELLGRSSLKGLRLGW
GLLSYWGQELKNSAITLLDTIAIAVANWTDSIIELGQRAGRAILNIPRRIRQGFERSL
L"
BASE COUNT 895 a 467 c 594 g 618 t
ORIGIN
1 atgagagtga gggggataca gaagaattat ccactcttat ggagatgggg cataatatgt
61 gggataatga taatttgtaa tgctgaacag ttgtgggtca cggtctacta tggggtacct
121 gtatggaaag aagcagatac caccctattt tgtgcatcag atgctaaggc atatgataca
181 gaagtacata atgtctgggc tacacatgcc tgtgtaccca cagaccctaa cccacaagaa
241 atgcatttga aaaatgtaac agaaaacttt aacatgtgga aaaataacat ggtagagcag
301 atgcatgcag atataattag tctatgggac caaagcctac agccatgtgt aaagttaacc
361 cctctctgtg ttactttaaa ctgccgcaat gtcagcacct ccaatgtcag cacctccaat
421 gtcacgagta acataaatgt cacgagtaac ataaaaggag aaatgacaaa ctgctcgttc
481 aatatgacca cagaaataag agataagaaa cagaaagtat attcactttt ttataaactt
541 gatgtagtac caattaataa tacgacagat gagtatatac taataaattg taatacttca
601 gccattacac aggcttgtcc aaaggtatcc tttgagccaa ttcccataca ttattgtgcc
661 ccagctggtt ttgcgattct aaaatgtaag gataaaaaat tcaagggaac agggccatgc
721 aagaatgtca gcacagtaca atgcacacat ggaatcaagc cagtagtatc aactcaactg
781 ttgttaaatg gcagtctagc agaagaaggg gtagtgatta gatctgaaaa tatctcaaac
841 aatgccaaaa ccataatagt acagttggat gagcctgtaa gcattaattg tgccaggcct
901 agcaacaata caagaaaaag ttggcgtata ggaccaggac aaacattcta tgcaacaggt
961 gacataatag gggatataag acaagcacat tgtaatgtca gtagaagaga atggaataaa
1021 actttacaca aggtagctac acaattaagg acgcaactaa atatcacaag aataatcttt
1081 gctaaccact caggagggga tttagaaatc acaacacata gttttaattg tagaggagaa
1141 tttttctatt gctacacatc aaacctgttt aacagtactt gggatgacaa cagtacttgg
1201 gataacaata ctacttggga taacagcacg acagaggaca ccaacataac tctccaatgc
1261 aggataaagc aaattgtaaa tatgtggcag agagtaggac aagcaatata tgcccctccc
1321 atccaaggag acataaagtg tgaatcaaac attactggat tattgttaac aagagatgga
1381 gagaataata ctatgaatga gactttcagg cctggaggag gagacatgag ggacaattgg
1441 agaagtgaat tatataaata taaagtagta aaaattgaac cactaggtgt agcacccacc
1501 catgcaaaaa gaagagtggt ggagagagaa aaaagagcag ttggactagg agctgtcctc
1561 tttgggttct taggagcagc aggaagcact atgggcgcgg cgtcaataac gctgacggta
1621 caggccagac aattattgtc tggtatagtg caacagcaga gcaatttgct gaaggctata
1681 gaggctcaac aacatctgtt gaaactcacg gtctggggca ttaaacagct ccaggcaaga
1741 gtcctggctc tggaaagata cctacaagat caacagctcc taggaatttg gggctgctct
1801 ggaaaactca tctgcaccac tactgtaccc tggaactcta gttggagcaa taaaacttat
1861 aatgacatat ggggaaacat gacctggctg caatgggata aagaaattag caattacaca
1921 agaatcatat atgatctaat tgaggaatcg cagaatcagc aggaaattaa tgaacaagac
1981 ttattggcat tggacaagtg ggcaagcttg tggaattggt ttgacatatc aaaatggctg
2041 tggtatataa aaatatttat aatgatagta ggaggcttga taggtttaag aatagttttt
2101 gctgtgctta ctataataaa tagagttagg cagggatact cacctttgtc gttccagacc
2161 cttacccccc accagaggga acccgacagg cccggaagaa tcgaagaagg aggtggcgag
2221 caagacagag acagatctgt gcgattagtg agcggattct tcgcgattgc ctgggacgat
2281 ctgaggagcc tgtgcctttt cagctaccac cgattgagag acttagtctt gattgcagtg
2341 agggctgtgg aacttctggg acgcagcagt ctcaagggac tgagactggg gtggggtctt
2401 ctatcatact ggggtcagga actaaagaat agtgccatta ctttgcttga tacaatagca
2461 atagcagtag ctaactggac agacagcatt atagaactag gacaaagagc tggtagagct
2521 attctcaaca tacctagaag aatcagacag ggcttcgaaa ggtctttgct ataa
//
last modified: Tue May 31 10:56 2022