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LOCUS HQ385449 2565 bp RNA linear VRL 04-NOV-2010
DEFINITION HIV-1 isolate N180032 from Gambia envelope glycoprotein (env) gene,
complete cds
ACCESSION HQ385449
VERSION HQ385449.1 GI:310975649
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2565)
Show all sequences for reference 1
AUTHORS de Silva,T.I., Turner,R., Hue,S., Trikha,R., Van Tienen,C.,
Onyango,C., Jaye,A., Foley,B., Whittle,H., Rowland-Jones,S.L. and
Cotten,M.
TITLE HIV-1 subtype distribution in the Gambia and the significant
presence of CRF49_cpx, a novel circulating recombinant form
JOURNAL Retrovirology 7 (1), 82 (2010)
PUBMED 20932333
REFERENCE 2 (bases 1 to 2565)
Show all sequences for reference 2
AUTHORS de Silva,T.I., Turner,R., Trikha,R., Onyango,C. and Cotten,M.
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2010) Viral Diseases Programme, MRC Laboratories
(UK) The Gambia, Atlantic Road, Fajara PO Box 273, The Gambia
FEATURES Location/Qualifiers
source 1..2565
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="N180032"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Gambia"
/collection_date="1997"
/note="subtype: CRF02_AG"
gene 1..2565
/gene="env"
CDS 1..2565
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADP55171.1"
/db_xref="GI:310975650"
/translation="MRVMGTQRNYPRLWRWGMMIFWIMITCNAENLWVTVYYGVPVWR
DANATLFCASEAKAYNTEVHNVWATHACVPTDPNPQELHLENVTEKFNMWKNNMVEQM
HEDIISLWDESLKPCVKLTPLCVTLNCQNFNSSNNETVISSSSNTSIDMREEIKNCSF
NVTTELRDRQKKEFALFYRLDVVPINGSDEKNISQYRLINCNTSAITQACPKVTFEPI
PIHYCAPAGFAILKCRDKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIV
IRSENFTNNAKTIIVQLKKPVGINCTRPGNNTRKSVHIGPGQTFYATGDIIGDIRQAH
CNVSRTAWNETLQEVARQLKKHFNKTTIIFANHSGGDLEITTHSFNCGGEFFYCNTSR
LFNSTWNNINSTGYNLTGSQENITLQCRIKQIVRMWQRVGQAMYAPPIRGEIRCNSNI
TGLLLTRDGGNENNNTNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRARRRVV
EREKRAVGLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQH
LLRLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKIICTTNVPWNSSWSNKTYNDI
WDNMTWLQWDKEVSNYTQIIYELIEESQIQQEKNEQDLLALDKWASLWNWFDISNWLW
YIKIFIMIVGGLIGLRIVFAVLTIINRVRQGYSPLSFQTLTHHQREPDRPERIEEGGG
EQDRDKSVRLVNGFLALAWDDLRNLCLFSYHRLRDFVLIAARGLRLGWEALKYLWNLL
SYWGQEIKNSAINLLDTIAIAAANWTDRVIDIAQRAGRAICNIPRRIRQGLERSLL"
BASE COUNT 914 a 450 c 589 g 612 t
ORIGIN
1 atgagagtga tggggacaca gaggaattat ccacgcttat ggagatgggg tatgatgata
61 ttttggataa tgataacttg taatgctgaa aatttgtggg tcacggtcta ctatggggta
121 cctgtgtgga gagacgcaaa tgccacctta ttttgtgcat cagaggctaa agcatataat
181 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc taacccacaa
241 gaactacatt tggaaaatgt aacagaaaag tttaatatgt ggaaaaataa catggtagaa
301 cagatgcatg aagatataat tagtctatgg gacgaaagcc taaagccatg tgtaaagtta
361 acccctctct gcgttacctt aaattgtcag aacttcaaca gcagcaataa cgaaaccgtt
421 atcagcagca gcagcaacac atctattgac atgcgcgagg aaataaaaaa ctgctctttc
481 aatgtgacca cagagttaag agataggcaa aagaaagagt ttgcactttt ttataggctt
541 gatgtagtac caatcaatgg aagtgatgaa aagaacatta gtcaatatag gttaataaat
601 tgtaatactt cagccattac acaggcttgt ccaaaagtaa cctttgagcc aattcccata
661 cattattgtg ccccagctgg ttttgcgatt ctaaagtgta gggataagaa gttcaatgga
721 acagggccat gtaagaatgt cagtacagta caatgcacac atggaatcaa gccagtagta
781 tcaactcaac tactgctaaa tggcagtcta gcagaagaag aaatagtgat tagatctgaa
841 aattttacaa acaatgccaa aaccataata gtacagttga aaaagcctgt aggaattaat
901 tgtaccagac ctggcaacaa tacaaggaaa agtgtacata taggaccagg gcaaacattc
961 tatgcaacag gtgacataat aggtgacata agacaagcac attgtaatgt cagtaggaca
1021 gcatggaatg aaactttaca agaagtagct agacaattaa aaaaacactt taataaaaca
1081 acaataatct ttgctaacca ctcaggaggg gacttagaaa tcacaacaca tagttttaat
1141 tgtggaggag aattcttcta ctgcaataca tcaagactgt ttaatagcac ttggaataac
1201 attaatagca ctgggtataa cctcacaggg tcacaggaaa atataactct ccaatgcaga
1261 ataaagcaaa ttgtaagaat gtggcagaga gtaggacaag caatgtatgc ccctcccatc
1321 cgaggagaaa taaggtgtaa ctcaaacatt actggactac tattaacaag agatggaggg
1381 aatgaaaata ataatacaaa cgagaccttc aggcctggag gaggagatat gagggacaat
1441 tggagaagtg aattatataa gtataaagta gtaaaaattg aaccactagg tgtagcaccc
1501 acccgtgcaa gaagaagagt ggtggagaga gaaaaaagag cagttggact gggagctgtc
1561 ttccttgggt tcttaggagc agcaggaagc actatgggcg cggcgtcaat aacgctgacg
1621 gtacaggcca gacaattatt gtccggtata gtgcaacagc aaagcaattt gctgaaggct
1681 atagaggctc aacaacatct gttgagactc acggtctggg gcattaaaca gctccaggca
1741 agagtcctgg ctctggaaag atacctaaag gatcaacagc tcctaggaat ttggggctgc
1801 tctggaaaaa tcatctgcac cactaatgta ccatggaact ctagttggag taataaaact
1861 tataatgaca tatgggataa catgacctgg ctacaatggg ataaagaagt tagcaattac
1921 acacaaataa tatatgagct aattgaagaa tcgcagatcc agcaggaaaa gaatgaacaa
1981 gacttattgg cattggacaa gtgggcaagt ctgtggaatt ggtttgacat atcaaattgg
2041 ctatggtata taaaaatatt tataatgata gtaggaggct tgataggttt aagaatagtt
2101 tttgctgtgc ttactataat aaatagagtt aggcagggat actcaccttt gtcattccag
2161 acccttaccc accaccagag ggaacccgac aggcccgaaa gaatcgaaga aggaggtgga
2221 gagcaagaca gagacaaatc cgtgagatta gtgaacggat tcttagcact tgcctgggac
2281 gacctgcgga acctgtgcct cttcagctac caccgattga gagactttgt cttgattgca
2341 gcgaggggac tgagactggg gtgggaagct ctcaaatatc tgtggaatct tctatcatac
2401 tggggtcagg agataaagaa tagtgctatt aatttacttg atacaatagc aatagcagca
2461 gctaattgga cagatagagt tatagacata gcacaaagag ctggtagagc tatttgcaac
2521 atacctagaa gaatcagaca gggcctcgaa aggtctttgc tataa
//
last modified: Tue May 31 10:56 2022