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LOCUS	    HQ385449		    2565 bp    RNA     linear	VRL 04-NOV-2010
DEFINITION  HIV-1 isolate N180032 from Gambia envelope glycoprotein (env) gene,
	    complete cds
ACCESSION   HQ385449
VERSION     HQ385449.1 GI:310975649
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2565)
            Show all sequences for reference 1
  AUTHORS   de Silva,T.I., Turner,R., Hue,S., Trikha,R., Van Tienen,C.,
	    Onyango,C., Jaye,A., Foley,B., Whittle,H., Rowland-Jones,S.L. and
	    Cotten,M.
  TITLE     HIV-1 subtype distribution in the Gambia and the significant
	    presence of CRF49_cpx, a novel circulating recombinant form
  JOURNAL   Retrovirology 7 (1), 82 (2010)
  PUBMED    20932333
REFERENCE   2 (bases 1 to 2565)
            Show all sequences for reference 2
  AUTHORS   de Silva,T.I., Turner,R., Trikha,R., Onyango,C. and Cotten,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2010) Viral Diseases Programme, MRC Laboratories
	    (UK) The Gambia, Atlantic Road, Fajara PO Box 273, The Gambia
FEATURES             Location/Qualifiers
     source	     1..2565
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="N180032"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Gambia"
		     /collection_date="1997"
		     /note="subtype: CRF02_AG"
     gene	     1..2565
		     /gene="env"
     CDS	     1..2565
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADP55171.1"
		     /db_xref="GI:310975650"
		     /translation="MRVMGTQRNYPRLWRWGMMIFWIMITCNAENLWVTVYYGVPVWR
		     DANATLFCASEAKAYNTEVHNVWATHACVPTDPNPQELHLENVTEKFNMWKNNMVEQM
		     HEDIISLWDESLKPCVKLTPLCVTLNCQNFNSSNNETVISSSSNTSIDMREEIKNCSF
		     NVTTELRDRQKKEFALFYRLDVVPINGSDEKNISQYRLINCNTSAITQACPKVTFEPI
		     PIHYCAPAGFAILKCRDKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIV
		     IRSENFTNNAKTIIVQLKKPVGINCTRPGNNTRKSVHIGPGQTFYATGDIIGDIRQAH
		     CNVSRTAWNETLQEVARQLKKHFNKTTIIFANHSGGDLEITTHSFNCGGEFFYCNTSR
		     LFNSTWNNINSTGYNLTGSQENITLQCRIKQIVRMWQRVGQAMYAPPIRGEIRCNSNI
		     TGLLLTRDGGNENNNTNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRARRRVV
		     EREKRAVGLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQH
		     LLRLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKIICTTNVPWNSSWSNKTYNDI
		     WDNMTWLQWDKEVSNYTQIIYELIEESQIQQEKNEQDLLALDKWASLWNWFDISNWLW
		     YIKIFIMIVGGLIGLRIVFAVLTIINRVRQGYSPLSFQTLTHHQREPDRPERIEEGGG
		     EQDRDKSVRLVNGFLALAWDDLRNLCLFSYHRLRDFVLIAARGLRLGWEALKYLWNLL
		     SYWGQEIKNSAINLLDTIAIAAANWTDRVIDIAQRAGRAICNIPRRIRQGLERSLL"
BASE COUNT	914 a	 450 c	  589 g    612 t
ORIGIN
       1 atgagagtga tggggacaca gaggaattat ccacgcttat ggagatgggg tatgatgata 
      61 ttttggataa tgataacttg taatgctgaa aatttgtggg tcacggtcta ctatggggta 
     121 cctgtgtgga gagacgcaaa tgccacctta ttttgtgcat cagaggctaa agcatataat 
     181 acagaagtac ataatgtctg ggctacacat gcctgtgtac ccacagaccc taacccacaa 
     241 gaactacatt tggaaaatgt aacagaaaag tttaatatgt ggaaaaataa catggtagaa 
     301 cagatgcatg aagatataat tagtctatgg gacgaaagcc taaagccatg tgtaaagtta 
     361 acccctctct gcgttacctt aaattgtcag aacttcaaca gcagcaataa cgaaaccgtt 
     421 atcagcagca gcagcaacac atctattgac atgcgcgagg aaataaaaaa ctgctctttc 
     481 aatgtgacca cagagttaag agataggcaa aagaaagagt ttgcactttt ttataggctt 
     541 gatgtagtac caatcaatgg aagtgatgaa aagaacatta gtcaatatag gttaataaat 
     601 tgtaatactt cagccattac acaggcttgt ccaaaagtaa cctttgagcc aattcccata 
     661 cattattgtg ccccagctgg ttttgcgatt ctaaagtgta gggataagaa gttcaatgga 
     721 acagggccat gtaagaatgt cagtacagta caatgcacac atggaatcaa gccagtagta 
     781 tcaactcaac tactgctaaa tggcagtcta gcagaagaag aaatagtgat tagatctgaa 
     841 aattttacaa acaatgccaa aaccataata gtacagttga aaaagcctgt aggaattaat 
     901 tgtaccagac ctggcaacaa tacaaggaaa agtgtacata taggaccagg gcaaacattc 
     961 tatgcaacag gtgacataat aggtgacata agacaagcac attgtaatgt cagtaggaca 
    1021 gcatggaatg aaactttaca agaagtagct agacaattaa aaaaacactt taataaaaca 
    1081 acaataatct ttgctaacca ctcaggaggg gacttagaaa tcacaacaca tagttttaat 
    1141 tgtggaggag aattcttcta ctgcaataca tcaagactgt ttaatagcac ttggaataac 
    1201 attaatagca ctgggtataa cctcacaggg tcacaggaaa atataactct ccaatgcaga 
    1261 ataaagcaaa ttgtaagaat gtggcagaga gtaggacaag caatgtatgc ccctcccatc 
    1321 cgaggagaaa taaggtgtaa ctcaaacatt actggactac tattaacaag agatggaggg 
    1381 aatgaaaata ataatacaaa cgagaccttc aggcctggag gaggagatat gagggacaat 
    1441 tggagaagtg aattatataa gtataaagta gtaaaaattg aaccactagg tgtagcaccc 
    1501 acccgtgcaa gaagaagagt ggtggagaga gaaaaaagag cagttggact gggagctgtc 
    1561 ttccttgggt tcttaggagc agcaggaagc actatgggcg cggcgtcaat aacgctgacg 
    1621 gtacaggcca gacaattatt gtccggtata gtgcaacagc aaagcaattt gctgaaggct 
    1681 atagaggctc aacaacatct gttgagactc acggtctggg gcattaaaca gctccaggca 
    1741 agagtcctgg ctctggaaag atacctaaag gatcaacagc tcctaggaat ttggggctgc 
    1801 tctggaaaaa tcatctgcac cactaatgta ccatggaact ctagttggag taataaaact 
    1861 tataatgaca tatgggataa catgacctgg ctacaatggg ataaagaagt tagcaattac 
    1921 acacaaataa tatatgagct aattgaagaa tcgcagatcc agcaggaaaa gaatgaacaa 
    1981 gacttattgg cattggacaa gtgggcaagt ctgtggaatt ggtttgacat atcaaattgg 
    2041 ctatggtata taaaaatatt tataatgata gtaggaggct tgataggttt aagaatagtt 
    2101 tttgctgtgc ttactataat aaatagagtt aggcagggat actcaccttt gtcattccag 
    2161 acccttaccc accaccagag ggaacccgac aggcccgaaa gaatcgaaga aggaggtgga 
    2221 gagcaagaca gagacaaatc cgtgagatta gtgaacggat tcttagcact tgcctgggac 
    2281 gacctgcgga acctgtgcct cttcagctac caccgattga gagactttgt cttgattgca 
    2341 gcgaggggac tgagactggg gtgggaagct ctcaaatatc tgtggaatct tctatcatac 
    2401 tggggtcagg agataaagaa tagtgctatt aatttacttg atacaatagc aatagcagca 
    2461 gctaattgga cagatagagt tatagacata gcacaaagag ctggtagagc tatttgcaac 
    2521 atacctagaa gaatcagaca gggcctcgaa aggtctttgc tataa
//
last modified: Tue May 31 10:56 2022


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