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LOCUS HQ385443 2601 bp RNA linear VRL 04-NOV-2010
DEFINITION HIV-1 isolate N005284 from Gambia envelope glycoprotein (env) gene,
complete cds
ACCESSION HQ385443
VERSION HQ385443.1 GI:310975637
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2601)
Show all sequences for reference 1
AUTHORS de Silva,T.I., Turner,R., Hue,S., Trikha,R., Van Tienen,C.,
Onyango,C., Jaye,A., Foley,B., Whittle,H., Rowland-Jones,S.L. and
Cotten,M.
TITLE HIV-1 subtype distribution in the Gambia and the significant
presence of CRF49_cpx, a novel circulating recombinant form
JOURNAL Retrovirology 7 (1), 82 (2010)
PUBMED 20932333
REFERENCE 2 (bases 1 to 2601)
Show all sequences for reference 2
AUTHORS de Silva,T.I., Turner,R., Trikha,R., Onyango,C. and Cotten,M.
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2010) Viral Diseases Programme, MRC Laboratories
(UK) The Gambia, Atlantic Road, Fajara PO Box 273, The Gambia
FEATURES Location/Qualifiers
source 1..2601
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="N005284"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Gambia"
/collection_date="1999"
/note="subtype: CRF49_cpx"
gene 1..2601
/gene="env"
CDS 1..2601
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADP55165.1"
/db_xref="GI:310975638"
/translation="MRAMETRTNCRTLWGWGLMILGMLMICRVTGNLWVTVYYGVPVW
KEAKTTLFCASDAKSYSTESHNIWATHACVPTDPNPQEINLKNVTEKFNIWNNDMVEQ
MYEDIISVWDESLKPCVKLTPLCVTLNCTNLNSTTNCTDSNTNSTSATNCTNLDNTTA
TSSAEEMKNCSFNMTTGGQKKKEYAIFYKADVVSSNNNSSEYILVHCNTTVIKQACPK
VSFEPIPIHYCAPAGFAILQCNDKKFNGTGLCLKCSLQHNVHMELTQRYPTQLLLNGS
IAKEQVIIRSPNTTNNAKTIIVQLNETVPINCIRLANNTRKGIHLGPGQVLYATGAVI
GNIRKAYCTINGTTWNNTLNKVAAKLREYFNKTIHFKPPNEGGDLEMIQHTFNCGGEF
FYCNTTQLFNSTWYKNGTTNSSWNGNDSTITLPCRIKQIVRMWQRVGQAIYAPPIAGN
ITCTSNITGLLLTRDGGNNSRDEDEEIFRPTGGDIRDNWRSELYKYKVVELKPLGIAP
TKAKRIVVEREKRAVGIGAVFLGFLGTARSTMGAASITLTVQAKQLLSGIVQQQSNLL
KAIEAQQHLLKLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKFICTTAVPWNSSW
SNKSYEEIWENMTWRQWESEIDNYTEIIYSLIGEAQSQQDKNEHDLLALGKWASLWNW
FDISNWLWYIKIFIMIVGGLIGLRIIFAVIAVVNRVRQGYSPLSLQTLIPNPTEADRP
GGIEEGGGEQGRIRSIRLVNGFLAIAWDDLRSLCLFSYHLLRDFVLIAARTVETLGLR
GWEILKYLGNLAQYWGKELKNSAISLLNATAITIAEGTDRIIGVTQRACRAILNIPRR
IRQGLERALL"
BASE COUNT 914 a 451 c 599 g 637 t
ORIGIN
1 atgagagcga tggagacacg gacgaactgc agaaccttat ggggatgggg cctcatgatc
61 ttggggatgt taatgatttg tagggttaca ggaaacttgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaggc gaagaccact ttattttgcg cctctgatgc taaatcatat
181 agtactgaaa gccataatat ctgggctaca catgcttgtg ttcccacaga cccaaaccca
241 caagagataa atctgaaaaa tgtaacagaa aagtttaaca tatggaacaa tgacatggta
301 gaacagatgt atgaggatat aatcagtgta tgggatgaaa gcttaaagcc atgtgtaaaa
361 ttaacccctc tctgtgttac tttaaactgt acaaatttaa atagtacaac aaactgtaca
421 gattcaaata caaattcaac tagtgcaaca aactgtacaa atttagataa tacaacagcc
481 actagttctg ctgaagagat gaaaaactgt tctttcaata tgactacagg aggccagaag
541 aagaaagagt atgcgatctt ctataaagca gatgtagtat caagtaataa taattctagt
601 gagtatattc tagtacattg taataccaca gtcattaaac aggcgtgtcc aaaggtgtct
661 tttgaaccaa tccccataca ttattgtgcc ccagctggtt ttgcgattct acaatgtaat
721 gataaaaagt tcaatgggac aggactatgc ctcaaatgtt cactacagca caatgtacac
781 atggaattaa cccagcggta tccaactcaa ctgctgctaa atggtagtat agcaaaagaa
841 caagtaataa ttagatctcc aaataccaca aacaatgcta agaccataat agtacaactt
901 aatgagactg taccaattaa ttgtatcaga ctcgccaaca atacaagaaa aggtatacac
961 ttaggaccag ggcaagtgct ctatgcaaca ggtgccgtaa taggaaacat aagaaaagca
1021 tattgtacca ttaatggaac aacatggaac aacactctaa ataaggtagc tgcaaaacta
1081 agggaatact ttaataaaac aatacacttt aaaccaccaa acgaaggggg ggatctagaa
1141 atgatacaac atacttttaa ttgtggagga gaatttttct attgtaatac aacacaattg
1201 tttaatagta cttggtataa gaatggcact acaaatagta gttggaatgg taatgatagt
1261 actatcacac tcccatgtag aataaagcaa attgtaagaa tgtggcagag agtaggacaa
1321 gcaatatatg cccctcctat cgcaggaaac attacatgca catcaaatat tacaggattg
1381 ctattgacac gtgatggggg aaacaatagt agggatgagg atgaagagat cttcagacct
1441 acaggaggag atataagaga caattggaga agtgaattat ataaatataa agtggtagaa
1501 cttaagccat tgggaatagc acccactaag gcaaaaagga tagtggtgga gagagaaaaa
1561 agagcagtgg gaataggagc tgtattcctt gggttcttgg gaacagcaag aagcactatg
1621 ggcgcagcgt caataacgct gacggtacag gctaaacaat tgttgtctgg catagtgcaa
1681 cagcaaagca atttgctgaa ggctatagag gcacaacaac atctgttgaa actcactgtc
1741 tggggcatta agcagctcca ggcaagagtc ctggctgtgg aaagatacct acaggatcaa
1801 cagctcctag gaatttgggg ctgctctgga aaattcatct gcaccactgc agtgccttgg
1861 aactctagct ggagtaataa atcttatgag gagatttggg agaacatgac ctggaggcaa
1921 tgggaaagcg aaattgacaa ttatacagaa ataatatact ctctaattgg agaagcacaa
1981 agccagcagg ataagaatga acacgactta ttggctttgg gtaaatgggc aagcctgtgg
2041 aattggtttg acatatcaaa ttggctgtgg tatataaaaa tattcataat gatagtagga
2101 ggcttaatag gtttaagaat aatttttgct gtgattgctg tagtaaatag agttaggcag
2161 ggatactcac ccttgtcgtt gcagaccctt atcccaaacc caacggaagc cgacagaccc
2221 ggaggaatcg aagaaggagg tggagagcaa ggcagaatca gatcgattcg cttagtgaac
2281 ggattcttag cgattgcctg ggacgacctc cggagcctgt gtcttttcag ctaccaccta
2341 ttgagagact ttgtcttgat tgcagcgagg actgtggaaa ctctgggact cagggggtgg
2401 gagatcctca agtatctggg gaatcttgcc caatattggg ggaaggaact aaagaatagt
2461 gctattagtt tgcttaatgc cacagcaata acaatagctg aaggaacaga taggatcata
2521 ggagtaacac aaagagcttg tagggcaatt cttaacatac ccagaagaat aagacagggg
2581 cttgaaaggg ctttgctata a
//
last modified: Tue May 31 10:56 2022