HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HQ385443		    2601 bp    RNA     linear	VRL 04-NOV-2010
DEFINITION  HIV-1 isolate N005284 from Gambia envelope glycoprotein (env) gene,
	    complete cds
ACCESSION   HQ385443
VERSION     HQ385443.1 GI:310975637
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2601)
            Show all sequences for reference 1
  AUTHORS   de Silva,T.I., Turner,R., Hue,S., Trikha,R., Van Tienen,C.,
	    Onyango,C., Jaye,A., Foley,B., Whittle,H., Rowland-Jones,S.L. and
	    Cotten,M.
  TITLE     HIV-1 subtype distribution in the Gambia and the significant
	    presence of CRF49_cpx, a novel circulating recombinant form
  JOURNAL   Retrovirology 7 (1), 82 (2010)
  PUBMED    20932333
REFERENCE   2 (bases 1 to 2601)
            Show all sequences for reference 2
  AUTHORS   de Silva,T.I., Turner,R., Trikha,R., Onyango,C. and Cotten,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2010) Viral Diseases Programme, MRC Laboratories
	    (UK) The Gambia, Atlantic Road, Fajara PO Box 273, The Gambia
FEATURES             Location/Qualifiers
     source	     1..2601
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="N005284"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Gambia"
		     /collection_date="1999"
		     /note="subtype: CRF49_cpx"
     gene	     1..2601
		     /gene="env"
     CDS	     1..2601
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADP55165.1"
		     /db_xref="GI:310975638"
		     /translation="MRAMETRTNCRTLWGWGLMILGMLMICRVTGNLWVTVYYGVPVW
		     KEAKTTLFCASDAKSYSTESHNIWATHACVPTDPNPQEINLKNVTEKFNIWNNDMVEQ
		     MYEDIISVWDESLKPCVKLTPLCVTLNCTNLNSTTNCTDSNTNSTSATNCTNLDNTTA
		     TSSAEEMKNCSFNMTTGGQKKKEYAIFYKADVVSSNNNSSEYILVHCNTTVIKQACPK
		     VSFEPIPIHYCAPAGFAILQCNDKKFNGTGLCLKCSLQHNVHMELTQRYPTQLLLNGS
		     IAKEQVIIRSPNTTNNAKTIIVQLNETVPINCIRLANNTRKGIHLGPGQVLYATGAVI
		     GNIRKAYCTINGTTWNNTLNKVAAKLREYFNKTIHFKPPNEGGDLEMIQHTFNCGGEF
		     FYCNTTQLFNSTWYKNGTTNSSWNGNDSTITLPCRIKQIVRMWQRVGQAIYAPPIAGN
		     ITCTSNITGLLLTRDGGNNSRDEDEEIFRPTGGDIRDNWRSELYKYKVVELKPLGIAP
		     TKAKRIVVEREKRAVGIGAVFLGFLGTARSTMGAASITLTVQAKQLLSGIVQQQSNLL
		     KAIEAQQHLLKLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKFICTTAVPWNSSW
		     SNKSYEEIWENMTWRQWESEIDNYTEIIYSLIGEAQSQQDKNEHDLLALGKWASLWNW
		     FDISNWLWYIKIFIMIVGGLIGLRIIFAVIAVVNRVRQGYSPLSLQTLIPNPTEADRP
		     GGIEEGGGEQGRIRSIRLVNGFLAIAWDDLRSLCLFSYHLLRDFVLIAARTVETLGLR
		     GWEILKYLGNLAQYWGKELKNSAISLLNATAITIAEGTDRIIGVTQRACRAILNIPRR
		     IRQGLERALL"
BASE COUNT	914 a	 451 c	  599 g    637 t
ORIGIN
       1 atgagagcga tggagacacg gacgaactgc agaaccttat ggggatgggg cctcatgatc 
      61 ttggggatgt taatgatttg tagggttaca ggaaacttgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaggc gaagaccact ttattttgcg cctctgatgc taaatcatat 
     181 agtactgaaa gccataatat ctgggctaca catgcttgtg ttcccacaga cccaaaccca 
     241 caagagataa atctgaaaaa tgtaacagaa aagtttaaca tatggaacaa tgacatggta 
     301 gaacagatgt atgaggatat aatcagtgta tgggatgaaa gcttaaagcc atgtgtaaaa 
     361 ttaacccctc tctgtgttac tttaaactgt acaaatttaa atagtacaac aaactgtaca 
     421 gattcaaata caaattcaac tagtgcaaca aactgtacaa atttagataa tacaacagcc 
     481 actagttctg ctgaagagat gaaaaactgt tctttcaata tgactacagg aggccagaag 
     541 aagaaagagt atgcgatctt ctataaagca gatgtagtat caagtaataa taattctagt 
     601 gagtatattc tagtacattg taataccaca gtcattaaac aggcgtgtcc aaaggtgtct 
     661 tttgaaccaa tccccataca ttattgtgcc ccagctggtt ttgcgattct acaatgtaat 
     721 gataaaaagt tcaatgggac aggactatgc ctcaaatgtt cactacagca caatgtacac 
     781 atggaattaa cccagcggta tccaactcaa ctgctgctaa atggtagtat agcaaaagaa 
     841 caagtaataa ttagatctcc aaataccaca aacaatgcta agaccataat agtacaactt 
     901 aatgagactg taccaattaa ttgtatcaga ctcgccaaca atacaagaaa aggtatacac 
     961 ttaggaccag ggcaagtgct ctatgcaaca ggtgccgtaa taggaaacat aagaaaagca 
    1021 tattgtacca ttaatggaac aacatggaac aacactctaa ataaggtagc tgcaaaacta 
    1081 agggaatact ttaataaaac aatacacttt aaaccaccaa acgaaggggg ggatctagaa 
    1141 atgatacaac atacttttaa ttgtggagga gaatttttct attgtaatac aacacaattg 
    1201 tttaatagta cttggtataa gaatggcact acaaatagta gttggaatgg taatgatagt 
    1261 actatcacac tcccatgtag aataaagcaa attgtaagaa tgtggcagag agtaggacaa 
    1321 gcaatatatg cccctcctat cgcaggaaac attacatgca catcaaatat tacaggattg 
    1381 ctattgacac gtgatggggg aaacaatagt agggatgagg atgaagagat cttcagacct 
    1441 acaggaggag atataagaga caattggaga agtgaattat ataaatataa agtggtagaa 
    1501 cttaagccat tgggaatagc acccactaag gcaaaaagga tagtggtgga gagagaaaaa 
    1561 agagcagtgg gaataggagc tgtattcctt gggttcttgg gaacagcaag aagcactatg 
    1621 ggcgcagcgt caataacgct gacggtacag gctaaacaat tgttgtctgg catagtgcaa 
    1681 cagcaaagca atttgctgaa ggctatagag gcacaacaac atctgttgaa actcactgtc 
    1741 tggggcatta agcagctcca ggcaagagtc ctggctgtgg aaagatacct acaggatcaa 
    1801 cagctcctag gaatttgggg ctgctctgga aaattcatct gcaccactgc agtgccttgg 
    1861 aactctagct ggagtaataa atcttatgag gagatttggg agaacatgac ctggaggcaa 
    1921 tgggaaagcg aaattgacaa ttatacagaa ataatatact ctctaattgg agaagcacaa 
    1981 agccagcagg ataagaatga acacgactta ttggctttgg gtaaatgggc aagcctgtgg 
    2041 aattggtttg acatatcaaa ttggctgtgg tatataaaaa tattcataat gatagtagga 
    2101 ggcttaatag gtttaagaat aatttttgct gtgattgctg tagtaaatag agttaggcag 
    2161 ggatactcac ccttgtcgtt gcagaccctt atcccaaacc caacggaagc cgacagaccc 
    2221 ggaggaatcg aagaaggagg tggagagcaa ggcagaatca gatcgattcg cttagtgaac 
    2281 ggattcttag cgattgcctg ggacgacctc cggagcctgt gtcttttcag ctaccaccta 
    2341 ttgagagact ttgtcttgat tgcagcgagg actgtggaaa ctctgggact cagggggtgg 
    2401 gagatcctca agtatctggg gaatcttgcc caatattggg ggaaggaact aaagaatagt 
    2461 gctattagtt tgcttaatgc cacagcaata acaatagctg aaggaacaga taggatcata 
    2521 ggagtaacac aaagagcttg tagggcaatt cttaacatac ccagaagaat aagacagggg 
    2581 cttgaaaggg ctttgctata a
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health