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LOCUS HQ377457 2544 bp RNA linear VRL 21-JAN-2011
DEFINITION HIV-1 isolate subject_498_week20_clone 39 from Brazil envelope
glycoprotein (env) gene, complete cds
ACCESSION HQ377457
VERSION HQ377457.1 GI:317408029
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2544)
Show all sequences for reference 1
AUTHORS McNicholas,P.M., Mann,P.A., Bsc,L.W., Phd,P.Q., Lee,E.,
McCarthy,M., Shen,J., Black,T.A. and Strizki,J.M.
TITLE Mapping and Characterization of Vicriviroc Resistance Mutations
From HIV-1 Isolated from Treatment-Experienced Subjects Enrolled in
a Phase II Study (VICTOR-E1).
JOURNAL J. Acquir. Immune Defic. Syndr.. 56(3); 222-9 (2011)
PUBMED 21209592
REFERENCE 2 (bases 1 to 2544)
Show all sequences for reference 2
AUTHORS McNicholas,P.M. and Strizki,J.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2010) Department of Infectious Diseases, Merck,
2015 Galloping Hill Road, Kenilworth, NJ 07033, USA
FEATURES Location/Qualifiers
source 1..2544
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="subject_498_week20_clone 39"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Brazil"
/collection_date="Mar-2007"
gene 1..2544
/gene="env"
CDS 1..2544
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADV17548.1"
/db_xref="GI:317408030"
/translation="MRAKETRKNYQHLWKWGMMLLGMLMICSAEEDKLWVTVYYGVPV
WKEATTTLFCASEAKAYDTEVHNVWATHACVPTDPSPHEQVLGNVTENFNMWKNNMVD
QMHEDIKSLWDQSLKPCVKLTPLCVTLNCSNYLRNATTTASTDMVGEIKNCSFNITTG
IGNKVKKEHALFNRFDIVKSDNDNTSHILVNCNTSVLTQACPKVSFEPIPIHYCAPAG
FAILKCSDPKFNGTGLCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVIIRSENITNN
AKTIIVQLNSSVVINCTRPNNNTRKSIHIGPGKAFYATGDIIGDIRQAHCNISSTAWN
NTLKKIVEKLREHFNKTIIFSPPVRGGDPEIVMHSFNCGGEFFYCNTSQLFNSTWNIN
GTWDDTGGERNITLPCRIRQIVNRWQEVGKAMYAPPIPGKITCRSNITGILLTRDGGG
TNNSHNETFRPGGGDMRDNWRSELYKYKVVSIEPLGIAPTKAKRRVVQREKRAVILGA
VFLGFLGAAGSTMGAAATALTVQARQLLSGIVQQQNNLLMAIEAQQHMLQLTVWGIKQ
LQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNTSWSKKTHDEIWQNMTWMQWER
EIDNYTDIIYGLLEKSQNQQEKNEQELLELDKWTSLWSWFDITNWLWYIKIFIMIVGG
LVGLRIVFTVLSIANRVRQGYSPLSFQTRLPARRGPDRPEGIEEGGGERDRDTSGYSA
SGFLTIIWVDLRSLCLFSYHRLRDLLLIAARIVELLGRRGWEALKYLWNLLQYWSQEL
KNSAISLLNTTAIAVGEGTDRIIEALQRAGRAILNIPRRIRQGLERALL"
BASE COUNT 887 a 441 c 601 g 615 t
ORIGIN
1 atgagagcga aggagaccag gaagaattat cagcacttgt ggaaatgggg catgatgctc
61 cttgggatgt taatgatctg tagtgctgaa gaagacaaat tgtgggtcac agtttattat
121 ggagtacctg tgtggaaaga agcaaccacc actctatttt gtgcatcaga agctaaagca
181 tatgatacag aagtacataa tgtttgggcc acacatgcct gtgtacccac agaccctagc
241 ccacatgaac aagtattggg aaatgtgaca gaaaacttta acatgtggaa aaataacatg
301 gtagaccaga tgcatgaaga tataaagagt ttatgggatc aaagtttaaa gccatgtgta
361 aaattaactc cactctgtgt tactttaaat tgctctaatt atttgaggaa tgctacaact
421 accgccagta ctgacatggt gggagaaata aaaaactgct ctttcaatat cactacaggc
481 ataggaaaca aggtaaagaa agaacatgca ctttttaata gatttgatat agtaaaatca
541 gataatgata atacaagcca tatattggta aattgtaata cctcagtcct tacacaggcc
601 tgtccaaagg tatcctttga accaattccc atacattatt gtgccccggc tggttttgcg
661 attctaaagt gctctgatcc aaagttcaat ggaacaggac tatgtacaaa tgtcagcaca
721 gtacaatgta cacatggaat taggccagta gtatcaactc aattgctgct aaatggcagt
781 ttagcagaag aagaggtaat aattagatct gaaaatatca caaacaatgc taaaaccata
841 atagtacagc taaacagctc tgtagtaatt aactgtacaa gacccaataa caatacaaga
901 aaaagcatac atataggacc agggaaagca ttttatgcaa caggagacat aataggagat
961 ataagacaag cacattgtaa cattagtagc acagcttgga acaacacttt aaaaaagata
1021 gttgaaaaat taagagaaca ctttaataaa acaataatct ttagccctcc tgtcagagga
1081 ggggacccag aaattgtaat gcacagtttt aattgtggag gggagttttt ctactgcaat
1141 acatcacaac tgtttaatag tacttggaat attaatggta cttgggatga tactggagga
1201 gagcgaaata tcacactccc atgcagaata agacaaattg taaacagatg gcaagaagta
1261 ggaaaagcaa tgtatgcccc tcccatccca ggaaaaatta catgtagatc aaatattaca
1321 gggatactat taacaagaga tggtggtggc accaataata gccataatga aaccttcaga
1381 cctggaggag gagatatgag ggacaattgg agaagtgaat tatataaata taaagtagta
1441 agcattgaac cattaggaat agcacccacc aaggcaaaga gaagagtggt gcagagagag
1501 aaaagagcag tgatattagg agctgtgttc cttgggttct tgggagcagc aggaagcact
1561 atgggcgcag cggcaacagc gctgacggta caggccagac aattattgtc tggtatagtg
1621 caacagcaga acaatctgct gatggctatt gaggcgcaac agcatatgtt gcaactcaca
1681 gtctggggca tcaaacagct ccaagcaaga gtcctggctg tggaaagata cctaaaggat
1741 caacagctcc tggggatttg gggttgctct ggaaaactca tttgcaccac tgctgtgcct
1801 tggaatacta gttggagtaa gaaaactcat gatgaaatct ggcagaacat gacctggatg
1861 cagtgggaga gagaaataga caattacaca gacataatat atgggttact tgagaaatcg
1921 caaaaccaac aagaaaagaa tgaacaggaa ttattggaat tggataagtg gacaagtttg
1981 tggagttggt ttgacataac aaactggctg tggtatataa aaatattcat aatgatagta
2041 gggggcttag taggtttaag aatagttttt actgtacttt ctatagcgaa tagagttagg
2101 cagggatact caccattgtc gttccagacc cgcctcccag ccaggagggg acccgacagg
2161 cccgaaggaa tcgaagaagg aggtggagag agagacagag acacatccgg ttactcagcg
2221 agtggattct taacaatcat ctgggtcgat ctgcggagcc tgtgcctctt cagctaccat
2281 cgcttgagag acttactctt gattgcagcg aggattgtgg aacttctggg acgcaggggg
2341 tgggaagctc tcaagtactt gtggaatctc ctgcagtatt ggagccagga actaaagaat
2401 agtgctatta gcttgcttaa taccacagca atagcagtag gtgaggggac agatagaatt
2461 atagaagctt tgcaaagagc tggtagagct attctcaata tacctagaag aataagacag
2521 ggcttagaaa gggctttgct ataa
//
last modified: Tue May 31 10:56 2022