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LOCUS HQ377384 2604 bp RNA linear VRL 21-JAN-2011
DEFINITION HIV-1 isolate subject_247_day1_clone 39 from Colombia envelope
glycoprotein (env) gene, complete cds
ACCESSION HQ377384
VERSION HQ377384.1 GI:317407883
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2604)
Show all sequences for reference 1
AUTHORS McNicholas,P.M., Mann,P.A., Bsc,L.W., Phd,P.Q., Lee,E.,
McCarthy,M., Shen,J., Black,T.A. and Strizki,J.M.
TITLE Mapping and Characterization of Vicriviroc Resistance Mutations
From HIV-1 Isolated from Treatment-Experienced Subjects Enrolled in
a Phase II Study (VICTOR-E1).
JOURNAL J. Acquir. Immune Defic. Syndr.. 56(3); 222-9 (2011)
PUBMED 21209592
REFERENCE 2 (bases 1 to 2604)
Show all sequences for reference 2
AUTHORS McNicholas,P.M. and Strizki,J.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2010) Department of Infectious Diseases, Merck,
2015 Galloping Hill Road, Kenilworth, NJ 07033, USA
FEATURES Location/Qualifiers
source 1..2604
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="subject_247_day1_clone 39"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Colombia"
/collection_date="Oct-2006"
gene 1..2604
/gene="env"
CDS 1..2604
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADV17475.1"
/db_xref="GI:317407884"
/translation="MRVMGIRKNYQHWWRGGMMLLGMLMICSVVGQQLWVTVYYGVPV
WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEILLPNVTEDFDMGKNNMVD
QMHEDIISLWDQSLKPCVKLTPLCVTLNCTNITKSENITQANITTSGNITQVTQDTNS
SREIMGDGDMKNCSFDVTTGIRDKVKKEYALFYNLDITQIDNDTYRLTSCNTSVITQA
CPKVSFEPIPIHYCTPAGYALLKCKDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLN
GSLAEEGVVIRSQNFSDNAKTIIVQLKEAIKINCTRPNNNTRKGIHLGPGGAFYTTGE
IIGDIRKAHCNLSRAEWNSTLSQVAIKLGEQFGKNKTVVFNSSSGGDLEIVMHIVNCG
GEFFYCNTTKLFNSTWYSNGTRLANDSDTRENITLPCRIKQIVNMWQEVGKAMYAPPI
SGQIRCVSNITGLLLTRDGGKENNKTETFRPEGGNMKDNWRSELYKYKVVKVEPLGVA
PTKAKRRVVQREKRTVGLGALFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNL
LMAIEAQQNMLRLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAAPWNAT
WSNKTQEEIWNNMTWMQWEKEIDNYTAQIYTLLENSQIQQEKNEQELLALDKWENLWS
WFSITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTHLPIPRGPDR
PEGTEEEGGDRDRDRSVRLVAGSFALIWDDLRSLCLFSYHRLRDLLLIVARIVELLGR
RGWGILKYWWSLLQYWSQELKNSVVSLLNATAIAVAEGTDRIIEIAQRIGRAIIHIPR
RIRQGFERALL"
BASE COUNT 905 a 457 c 618 g 624 t
ORIGIN
1 atgagagtga tggggatcag gaagaattat cagcactggt ggagaggggg catgatgctc
61 cttgggatgt taatgatttg tagtgttgta ggacaacaat tgtgggtcac agtctattat
121 ggggtacctg tgtggaaaga agctaccacc acactatttt gtgcatcaga tgctaaagca
181 tatgatacag aggtacataa tgtttgggcc acacatgcct gtgtacccac agaccccaat
241 ccacaagaaa tactattgcc aaatgtaaca gaagattttg acatgggaaa aaataacatg
301 gtagatcaga tgcatgagga tataatcagt ttatgggatc aaagcctaaa accctgtgta
361 aaactgaccc cactctgtgt cactttaaat tgcactaata ttactaaatc agaaaatatt
421 actcaggcca atattactac gtcagggaat attactcagg tcactcagga caccaatagt
481 agtagggaaa taatggggga cggggacatg aaaaactgct ctttcgatgt taccacaggc
541 ataagagata aggtgaaaaa agaatatgca cttttttata accttgatat aacacaaata
601 gataatgaca cctataggtt gacaagttgt aacacctcag tcattacaca ggcctgtcca
661 aaggtatcct ttgagccaat tcccatacat tattgtactc cagctggtta tgcacttcta
721 aagtgtaagg ataaaaagtt caatggaaca ggaccatgta caaatgtcag cacagtacaa
781 tgtacacatg gcattaggcc agtagtatcg actcaactac tgttaaatgg cagtctagca
841 gaagaagggg tagtaattag atctcaaaat ttctcagaca atgctaaaac cataatagta
901 cagctgaagg aagctataaa gattaattgt acaagaccca acaacaatac aagaaaaggt
961 atacatctag gaccaggggg agcattttac acaacaggtg aaataatagg agatataaga
1021 aaagcacatt gtaaccttag tagagcagaa tggaatagca ctttaagcca ggtagctatc
1081 aaattaggcg aacaatttgg caaaaacaaa acagtagtct ttaattcatc ctcaggaggg
1141 gacctagaaa ttgtaatgca cattgttaat tgtggagggg agttcttcta ctgtaataca
1201 acaaaattgt ttaatagtac ttggtatagt aatggaacgc gacttgcaaa tgacagtgat
1261 acaagggaaa acatcacact cccatgcaga ataaaacaaa ttgtaaacat gtggcaggaa
1321 gtaggaaaag caatgtatgc ccctcctatc agcggacaaa ttagatgtgt atcaaatata
1381 acagggctgc ttttaacaag ggatggtggg aaagagaaca ataaaaccga gaccttcaga
1441 cctgaaggag gaaacatgaa ggataattgg agaagtgaat tatacaaata taaagtagta
1501 aaagttgagc cattaggagt agcacccacc aaggcaaaga gaagagtggt gcagagagaa
1561 aaaagaacag tgggactggg agctttgttc cttgggttct tgggagcagc aggaagcact
1621 atgggcgcag cgtcagtgac gctgacggta caagccagac aattattgtc tggtatagtg
1681 caacagcaga acaacttgct gatggctatt gaggcgcaac aaaatatgtt gcgactcaca
1741 gtctggggca tcaagcagct ccaggcaaga gtcctagctg tggaaagata cctaagggat
1801 caacagctcc tagggatttg gggttgctct ggaaaactca tctgcaccac tgctgcgcct
1861 tggaatgcta cttggagtaa taaaactcag gaggagattt ggaataacat gacctggatg
1921 cagtgggaaa aagaaattga taattacaca gcacaaatat acacattact tgaaaattca
1981 caaatccaac aagaaaagaa tgaacaagaa ttattggcat tagataagtg ggaaaatctg
2041 tggagttggt ttagcataac aaattggctg tggtatataa aaatattcat aatgatagta
2101 ggaggcttga taggcttaag aatagttttt gctgtacttt ctatagtaaa tagagttagg
2161 cagggatact caccattatc gtttcagacc cacctcccaa tcccgagggg acccgacagg
2221 ccagaaggaa cagaagaaga aggtggagac agagacagag acagatcagt tcgattagtg
2281 gctggatcct tcgcacttat ctgggacgac ctgcggagcc tgtgcctctt cagctaccac
2341 cgcttgagag acttactctt gattgtagcg aggattgtgg aacttctggg acgcaggggg
2401 tggggaatcc tcaaatattg gtggagtctc ctacagtatt ggagtcagga gctaaagaat
2461 agtgttgtta gcttgcttaa tgctacagct atcgcagtag ctgaagggac agataggatt
2521 atagaaatag cacaaagaat tggtagagct atcatccaca tacctagaag aataagacag
2581 ggcttcgaaa gggctttgct ataa
//
last modified: Tue May 31 10:56 2022