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LOCUS HQ377375 2604 bp RNA linear VRL 21-JAN-2011
DEFINITION HIV-1 isolate subject_247_day1_clone 10 from Colombia envelope
glycoprotein (env) gene, complete cds
ACCESSION HQ377375
VERSION HQ377375.1 GI:317407865
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2604)
Show all sequences for reference 1
AUTHORS McNicholas,P.M., Mann,P.A., Bsc,L.W., Phd,P.Q., Lee,E.,
McCarthy,M., Shen,J., Black,T.A. and Strizki,J.M.
TITLE Mapping and Characterization of Vicriviroc Resistance Mutations
From HIV-1 Isolated from Treatment-Experienced Subjects Enrolled in
a Phase II Study (VICTOR-E1).
JOURNAL J. Acquir. Immune Defic. Syndr.. 56(3); 222-9 (2011)
PUBMED 21209592
REFERENCE 2 (bases 1 to 2604)
Show all sequences for reference 2
AUTHORS McNicholas,P.M. and Strizki,J.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2010) Department of Infectious Diseases, Merck,
2015 Galloping Hill Road, Kenilworth, NJ 07033, USA
FEATURES Location/Qualifiers
source 1..2604
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="subject_247_day1_clone 10"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Colombia"
/collection_date="Oct-2006"
gene 1..2604
/gene="env"
CDS 1..2604
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADV17466.1"
/db_xref="GI:317407866"
/translation="MRVMGIRKNYQHWWRGGMMLLGMLMICNVVGQQLWVTVYYGVPV
WKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEILLPNVTEDFGMEKNNMVD
QMHEDIISLWDQSLKPCVKLTPLCVTLNCTNITKSENITQANITTSGNITQVTQDTNS
SREIMGDGDMKNCSFDVTTGIREKVKKEYALFYNLDITQIDNDTYRLTSCNTSVITQA
CPKVSFEPIPIHYCTPAGYALLKCKDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLN
GSLAEEGVVIRSQNFSDNAKTIIVQLKEAIKINCTRPNNNTRKGIHLGPGGAFYTTGE
IIGDIRKAHCNLSRAEWNNTLSQVAIKLGEQFGKNKTVVFNSSSGGDLEIVMHIVNCG
GEFFYCNTTKLFNSTWYSNGTQLANDSDTSENITLPCRIKQIVNMWQEVGKAMYAPPI
SGQIRCVSNITGLLLTRDGGKENNKTETFRPEGGNMKDNWRSELYKYKVVKVEPLGVA
PTKAKRRVVQREKRTVGLGALFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNL
LMAIEAQQNMLRLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNAT
WSNKTQEEIWNNMTWMQWEKEIDNYTAQIYTLLENSQIQQEKNEQELLALDKWENLWS
WFSITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTHLPIQRGPDR
PEGTEEEGGDRDRDRSVRLVTGSFALIWDDLRSLCLFSYHRLRDLLLIVARIVELLGR
RGWGILKYWWSLLQYWSQELKNSTVSLLNATAIAVAEGTDRIIEIAQRIGRAIIHIPR
RIRQGFERALL"
BASE COUNT 910 a 459 c 615 g 620 t
ORIGIN
1 atgagagtga tggggatcag gaagaattat cagcactggt ggagaggggg catgatgctc
61 cttgggatgt taatgatttg taatgttgta ggacaacaat tgtgggtcac agtctattat
121 ggggtacctg tgtggaaaga agctaccacc acactatttt gtgcatcaga tgctaaagca
181 tatgatacag aggtacataa tgtttgggcc acacatgcct gtgtacccac agaccccaat
241 ccacaagaaa tactattgcc aaatgtaaca gaagattttg gcatggaaaa aaataacatg
301 gtagatcaga tgcatgagga tataatcagt ttatgggatc aaagcctaaa accctgtgta
361 aaactgaccc cactctgtgt cactttgaat tgcactaata ttactaaatc agaaaatatt
421 actcaggcca atattactac gtcagggaat attactcagg tcactcagga caccaatagt
481 agtagggaaa taatggggga cggggacatg aaaaactgct ctttcgatgt taccacaggc
541 ataagagaga aggtgaaaaa agaatatgca cttttttata accttgatat aacacaaata
601 gataatgaca cctataggtt gacaagttgt aacacctcag tcattacaca ggcctgtcca
661 aaggtatcct ttgagccaat tcccatacat tattgtactc cagctggcta tgcacttcta
721 aagtgtaagg ataaaaagtt caatggaaca ggaccatgta caaatgtcag cacagtacaa
781 tgtacacatg gcattaggcc agtagtatca actcaactac tgttaaatgg cagtctagca
841 gaagaagggg tagtaattag atctcaaaat ttctcagaca atgctaaaac cataatagta
901 cagctgaagg aagctataaa gattaattgt acaagaccca acaacaatac aagaaaaggt
961 atacatctag gaccaggggg agcattttac acaacaggtg aaataatagg agatataaga
1021 aaagcacatt gtaaccttag tagagcagaa tggaataaca ctttaagcca ggtagctatc
1081 aaattaggcg aacaatttgg caaaaacaaa acagtagtct ttaattcatc ctcaggaggg
1141 gacctagaaa ttgtaatgca cattgttaat tgtggagggg agttcttcta ctgtaataca
1201 acaaaattgt ttaatagtac ttggtatagt aatggaacgc aacttgcaaa tgacagtgat
1261 acaagtgaaa acatcacact cccatgcaga ataaaacaaa ttgtaaacat gtggcaggaa
1321 gtaggaaaag caatgtatgc ccctcctatc agcggacaaa ttagatgtgt atcaaatata
1381 acagggctgc ttttaacgag ggatggtggg aaagagaaca ataaaaccga gaccttcaga
1441 cctgaaggag gaaacatgaa agataattgg agaagtgaat tatacaaata taaggtagta
1501 aaagttgagc cattaggagt agcacccacc aaggcaaaga gaagagtggt gcagagagaa
1561 aaaagaacag tgggactggg agctttgttc cttgggttct tgggagcagc aggaagcact
1621 atgggcgcag cgtcagtgac gctgacggta caagccagac aattattgtc tggtatagtg
1681 caacagcaga acaacttgct gatggctatt gaggcgcaac aaaatatgtt gcgactcaca
1741 gtctggggca tcaagcagct ccaggcaaga gtcctagctg tggaaagata cctaagggat
1801 caacagctcc tagggatttg gggttgctct ggaaaactca tctgcaccac tgctgtgcct
1861 tggaatgcta cttggagtaa taaaactcag gaggagattt ggaataacat gacctggatg
1921 cagtgggaaa aagaaattga taactacaca gcacaaatat acacattact tgaaaattca
1981 caaatccaac aagaaaagaa tgaacaagaa ttattggcat tagataagtg ggaaaatctg
2041 tggagttggt ttagcataac aaattggctg tggtatataa aaatattcat aatgatagta
2101 ggaggcttga taggcttaag aatagttttt gctgtacttt ctatagtaaa tagagttagg
2161 cagggatact caccattatc gtttcagacc cacctcccaa tccagagggg acccgacagg
2221 ccagaaggaa cagaagaaga aggtggagac agagacagag acagatcagt tcgattagtg
2281 actggatcct tcgcacttat ctgggacgac ctgcggagcc tgtgcctctt cagctaccac
2341 cgcttgagag acttactctt gattgtagcg aggattgtgg aacttctggg acgcaggggg
2401 tggggaatcc tcaaatattg gtggagtctc ctacagtatt ggagtcagga gctaaagaat
2461 agtactgtta gcttgcttaa tgccacagct atcgcagtag ctgaagggac agataggatt
2521 atagaaatag cacaaagaat tgggagagct atcatccaca tacctagaag aataagacag
2581 ggcttcgaaa gggctttgct ataa
//
last modified: Tue May 31 10:56 2022