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LOCUS HQ257201 708 bp RNA linear VRL 09-MAY-2011
DEFINITION HIV-1 isolate ESQ54 from USA reverse transcriptase (pol) gene,
partial cds
ACCESSION HQ257201
VERSION HQ257201.1 GI:332100123
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 708)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Lingappa,J., Beck,I., Frenkel,L.M., Pepper,G.,
Celum,C., Wald,A., Fife,K.H., Were,E., Mugo,N., Sanchez,J.,
Essex,M., Makhema,J., Kiarie,J., Farquhar,C. and Corey,L.
TITLE Herpes simplex virus type 2 suppressive therapy with acyclovir or
valacyclovir does not select for specific HIV-1 resistance in
HIV-1/HSV-2 dually infected persons
JOURNAL J. Infect. Dis. 203 (1), 117-121 (2011)
PUBMED 21148504
REFERENCE 2 (bases 1 to 708)
Show all sequences for reference 2
AUTHORS Pepper,G.
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2010) Virology, University of Washington, Seattle
Childrens Hospital 4800 Sandpoint Way NE W8814, Seattle, WA 98105,
USA
FEATURES Location/Qualifiers
source 1..708
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="ESQ54"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene <1..>708
/gene="pol"
CDS <1..>708
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AEE01103.1"
/db_xref="GI:332100124"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
NKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRHHLLRWGLTTPD
KKHQKEPPFLWMGYELHP"
BASE COUNT 285 a 119 c 139 g 165 t
ORIGIN
1 cccattagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaaa
61 gttaaacaat ggccattgac agaagaaaaa ataaaagcat tagtagaaat ttgtacagaa
121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa agaaaaaaga cagtactaaa tggagaaaat tagtagactt cagggaactt
241 aataaaagaa ctcaagactt ctgggaagtt caattaggaa taccacatcc cgcagggtta
301 aaaaagaaca aatcagtaac agtactggat gtgggtgatg catatttttc agttccatta
361 gatgaagact tcaggaagta tactgcattt accataccta gcataaacaa tgagacacca
421 gggattagat atcagtacaa tgtgctacca cagggatgga aaggatcacc agcaatattc
481 caaagtagca tgataaaaat cttagagcct tttagaaaac aaaatccaga catagttatc
541 tatcaataca tggatgattt gtatgtagga tctgacttag aaatagggca gcatagaaca
601 aaaatagagg aactgagaca ccatctgttg aggtggggat taaccacacc agacaaaaaa
661 catcagaagg aacctccatt tctttggatg ggttatgaac tccatcct
//
last modified: Tue May 31 10:56 2022