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LOCUS HQ257179 707 bp RNA linear VRL 09-MAY-2011
DEFINITION HIV-1 isolate PERU34 from Peru reverse transcriptase (pol) gene,
partial cds
ACCESSION HQ257179
VERSION HQ257179.1 GI:332100079
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 707)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Lingappa,J., Beck,I., Frenkel,L.M., Pepper,G.,
Celum,C., Wald,A., Fife,K.H., Were,E., Mugo,N., Sanchez,J.,
Essex,M., Makhema,J., Kiarie,J., Farquhar,C. and Corey,L.
TITLE Herpes simplex virus type 2 suppressive therapy with acyclovir or
valacyclovir does not select for specific HIV-1 resistance in
HIV-1/HSV-2 dually infected persons
JOURNAL J. Infect. Dis. 203 (1), 117-121 (2011)
PUBMED 21148504
REFERENCE 2 (bases 1 to 707)
Show all sequences for reference 2
AUTHORS Pepper,G.
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2010) Virology, University of Washington, Seattle
Childrens Hospital 4800 Sandpoint Way NE W8814, Seattle, WA 98105,
USA
FEATURES Location/Qualifiers
source 1..707
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="PERU34"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Peru"
/note="subtype: B"
gene <1..>707
/gene="pol"
CDS <1..>707
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AEE01081.1"
/db_xref="GI:332100080"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTAEKIKALVEICTEMEKE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKK
KKSVTVLDVGDAYFSVPLDKXFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAIF
QCSMTKILDPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRRHLLKWGFTTPD
KKHQKEPPFLWMGYELHP"
BASE COUNT 277 a 121 c 132 g 165 t 12 other
ORIGIN
1 cccattagtc ctattgaaac tgtaccagta aaattraagc caggaatgga tggcccaaaa
61 gttaaacaat ggccattrac agcagaaaar ataaaagcat tagtagaaat ttgcacagaa
121 atggaaaagg aaggaaaaat atcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa araaraarga cagtactaag tggagaaaat tagtagattt cagagaactt
241 aataagagaa ctcaagactt ctgggaagtt caattaggra taccacatcc ctcaggatta
301 aaaaagaaaa agtcagtaac agtactggat gtgggtgatg catatttttc agttccctta
361 gataaagamt tcagraagta cactgcattt accataccta gtrtaaacaa tgagacacca
421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 caatgtagca tgacaaagat cttagatcct tttagaaaac aaaatccaga catagttatc
541 tatcaataca tggatgattt gtatgtagga tctgacttag agataggrca gcatagaaca
601 aaaatagaag aactgagacg acatctgttg aartggggat ttaccacacc agacaaaaaa
661 catcagaaag aacccccatt cctttggatg ggttatgaac tccatcc
//
last modified: Tue May 31 10:56 2022