HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HQ257179		     707 bp    RNA     linear	VRL 09-MAY-2011
DEFINITION  HIV-1 isolate PERU34 from Peru reverse transcriptase (pol) gene,
	    partial cds
ACCESSION   HQ257179
VERSION     HQ257179.1 GI:332100079
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 707)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Lingappa,J., Beck,I., Frenkel,L.M., Pepper,G.,
	    Celum,C., Wald,A., Fife,K.H., Were,E., Mugo,N., Sanchez,J.,
	    Essex,M., Makhema,J., Kiarie,J., Farquhar,C. and Corey,L.
  TITLE     Herpes simplex virus type 2 suppressive therapy with acyclovir or
	    valacyclovir does not select for specific HIV-1 resistance in
	    HIV-1/HSV-2 dually infected persons
  JOURNAL   J. Infect. Dis. 203 (1), 117-121 (2011)
  PUBMED    21148504
REFERENCE   2 (bases 1 to 707)
            Show all sequences for reference 2
  AUTHORS   Pepper,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2010) Virology, University of Washington, Seattle
	    Childrens Hospital 4800 Sandpoint Way NE W8814, Seattle, WA 98105,
	    USA
FEATURES             Location/Qualifiers
     source	     1..707
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="PERU34"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Peru"
		     /note="subtype: B"
     gene	     <1..>707
		     /gene="pol"
     CDS	     <1..>707
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AEE01081.1"
		     /db_xref="GI:332100080"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTAEKIKALVEICTEMEKE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKK
		     KKSVTVLDVGDAYFSVPLDKXFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAIF
		     QCSMTKILDPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRRHLLKWGFTTPD
		     KKHQKEPPFLWMGYELHP"
BASE COUNT	277 a	 121 c	  132 g    165 t     12 other
ORIGIN
       1 cccattagtc ctattgaaac tgtaccagta aaattraagc caggaatgga tggcccaaaa 
      61 gttaaacaat ggccattrac agcagaaaar ataaaagcat tagtagaaat ttgcacagaa 
     121 atggaaaagg aaggaaaaat atcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 tttgccataa araaraarga cagtactaag tggagaaaat tagtagattt cagagaactt 
     241 aataagagaa ctcaagactt ctgggaagtt caattaggra taccacatcc ctcaggatta 
     301 aaaaagaaaa agtcagtaac agtactggat gtgggtgatg catatttttc agttccctta 
     361 gataaagamt tcagraagta cactgcattt accataccta gtrtaaacaa tgagacacca 
     421 gggattagat atcagtacaa tgtgcttcca cagggatgga aaggatcacc agcaatattc 
     481 caatgtagca tgacaaagat cttagatcct tttagaaaac aaaatccaga catagttatc 
     541 tatcaataca tggatgattt gtatgtagga tctgacttag agataggrca gcatagaaca 
     601 aaaatagaag aactgagacg acatctgttg aartggggat ttaccacacc agacaaaaaa 
     661 catcagaaag aacccccatt cctttggatg ggttatgaac tccatcc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health