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LOCUS HQ172262 630 bp DNA linear VRL 01-SEP-2010
DEFINITION HIV-1 isolate E_B_DNA_k from Zimbabwe envelope glycoprotein (env)
gene, partial cds
ACCESSION HQ172262
VERSION HQ172262.1 GI:304572623
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 630)
Show all sequences for reference 1
AUTHORS Gantt,S., Carlsson,J., Heath,L., Bull,M.E., Shetty,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Genetic analyses of HIV-1 env sequences demonstrate limited
compartmentalization in breast milk and suggest viral replication
within the breast that increases with mastitis.
JOURNAL J. Virol.. 84(20); 10812-9 (2010)
PUBMED 20660189
REFERENCE 2 (bases 1 to 630)
Show all sequences for reference 2
AUTHORS Gantt,S., Carlsson,J.N., Heath,L., Bull,M.E., Zijenah,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2010) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98101, USA
FEATURES Location/Qualifiers
source 1..630
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="E_B_DNA_k"
/isolation_source="whole blood"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Zimbabwe"
/collection_date="2005"
/note="subtype: C"
gene <1..>630
/gene="env"
CDS <1..>630
/gene="env"
/note="gp120"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM45451.1"
/db_xref="GI:304572624"
/translation="SLAEEGIIIRSKNLTNNAKTIIVHLNKSVEINCTRPGNNTRTSV
RIGPGQTFYATGDIIGDIRQAHCNISQQKWYEALQGVVEKLREHFPNKIINFTSPSGG
DLEITTHSFNCGGEFFYCNTSKLFNSTYWHNDTCMPNDTCKGTGNSTKITIPCRIKQI
INMWQEVGRAMYAPPIAGNITCRSNITGLLLIRDGGQTNKNSTTEIFRPG"
BASE COUNT 262 a 105 c 121 g 142 t
ORIGIN
1 agcctagcag aagaggggat aataattaga tctaagaatt tgacaaacaa tgccaaaaca
61 ataatagtac atcttaataa atctgtagaa attaattgta caagacccgg caataataca
121 agaacaagtg taaggatagg accaggacag acattctatg caacaggaga cataatagga
181 gatataagac aagcacattg taacattagt caacaaaaat ggtatgaagc tttacaaggg
241 gtagtagaga aattaagaga acacttccct aataaaataa taaactttac atcaccctca
301 ggaggggacc tagagattac aacacatagc tttaattgcg gaggagagtt tttctattgc
361 aatacatcaa aactgtttaa tagtacatac tggcataatg atacctgcat gcctaatgat
421 acgtgcaagg gaacaggaaa ttcaacaaaa atcacaatcc catgtagaat aaaacaaatt
481 ataaacatgt ggcaggaggt aggacgagca atgtatgccc ctcccattgc aggaaacata
541 acatgtagat caaatatcac aggactgcta ttaatacgtg atggaggaca gacaaataaa
601 aatagtacca cagagatatt tagacctgga
//
last modified: Tue May 31 10:56 2022