View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS HQ172213 604 bp RNA linear VRL 01-SEP-2010
DEFINITION HIV-1 isolate B_left_BM_RNA_h from Zimbabwe envelope glycoprotein
(env) gene, partial cds
ACCESSION HQ172213
VERSION HQ172213.1 GI:304572527
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 604)
Show all sequences for reference 1
AUTHORS Gantt,S., Carlsson,J., Heath,L., Bull,M.E., Shetty,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Genetic analyses of HIV-1 env sequences demonstrate limited
compartmentalization in breast milk and suggest viral replication
within the breast that increases with mastitis.
JOURNAL J. Virol.. 84(20); 10812-9 (2010)
PUBMED 20660189
REFERENCE 2 (bases 1 to 604)
Show all sequences for reference 2
AUTHORS Gantt,S., Carlsson,J.N., Heath,L., Bull,M.E., Zijenah,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2010) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98101, USA
FEATURES Location/Qualifiers
source 1..604
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="B_left_BM_RNA_h"
/isolation_source="skim breast milk lactoserum"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Zimbabwe"
/collection_date="2005"
/note="subtype: C"
gene <1..>604
/gene="env"
CDS <1..>604
/gene="env"
/note="gp120"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM45404.1"
/db_xref="GI:304572528"
/translation="SIAEDIIIRSENLTNNAKTIIVQFNETVKITCTRHNNNTRESMR
IGPGHTFYATGDIIGDIREAHCNVSKRNWTKALQGVSEKLKEHFNKTIKFNSSSGGDP
EITLHSFNCGGEFFYCNTSQLFNFTYNTTTDNTTSEDITLTLPCRIKQIINMWQEVGQ
AMYAPPIAGNITCVSNITGLLLVRDGGNTNTSHSTEIFRPG"
BASE COUNT 251 a 106 c 108 g 139 t
ORIGIN
1 tagcatagca gaagacataa taattagatc tgaaaatctg acaaacaatg ccaaaacaat
61 aatagtacag tttaatgaaa ctgtaaaaat tacgtgtaca agacacaaca ataatacaag
121 agaaagcatg aggataggac caggacacac attctatgca acaggtgata taataggaga
181 catcagagaa gcacattgta atgttagtaa aaggaattgg actaaagctt tacaaggggt
241 aagtgaaaaa ttaaaagaac actttaataa aacaataaaa tttaactcat cctcaggagg
301 ggacccagaa attacgttgc atagctttaa ttgtggagga gaatttttct attgcaatac
361 atcgcaactg tttaatttta catacaatac aactacagat aatacaactt cagaggacat
421 cacacttaca ctcccatgca gaataaaaca aattataaac atgtggcagg aggtaggaca
481 ggcaatgtat gcccctccca ttgcaggaaa cataacatgt gtatcaaaca tcacaggact
541 actattagta cgtgatggag gcaacactaa cactagccat agcacagaaa tattcagacc
601 tgga
//
last modified: Tue May 31 10:56 2022