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LOCUS HQ012321 760 bp DNA linear VRL 19-APR-2011
DEFINITION HIV-1 isolate 10ZA_SAVE2200 from South Africa reverse transcriptase
(pol) gene, partial cds
ACCESSION HQ012321
VERSION HQ012321.1 GI:328905145
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 760)
Show all sequences for reference 1
AUTHORS El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
Morris,L. and Kantor,R.
TITLE Viremia and drug resistance among HIV-1 patients on antiretroviral
treatment: a cross-sectional study in Soweto, South Africa
JOURNAL AIDS 24 (11), 1679-1687 (2010)
PUBMED 20453629
REFERENCE 2 (bases 1 to 760)
Show all sequences for reference 2
AUTHORS El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
Morris,L. and Kantor,R.
TITLE Direct Submission
JOURNAL Submitted (03-AUG-2010) National Institute for Communicable
Diseases (NICD), Virus Research Unit, Private Bag X4, Johannesburg,
Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
FEATURES Location/Qualifiers
source 1..760
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="10ZA_SAVE2200"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="08-Aug-2008"
gene <1..>760
/gene="pol"
CDS <1..>760
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AEB54848.1"
/db_xref="GI:328905146"
/translation="ETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITK
IGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLXKNKSVT
XLDVGDAYFSVPLDEGFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAIFQSSMT
KILEPFRAQNPDIVIYQYVDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQK
EPPFLWMGYELHPDTWTVQPIKLPEKDSWTVNDIQ"
BASE COUNT 303 a 126 c 160 g 166 t 5 other
ORIGIN
1 gaaactgtac cagtaaaatt aaagccagga atggacgggc caaaggttaa acaatggccc
61 ttgacagaag aaaaaataaa agcattaaca gcaatttgtg aagaaatgga gaaggaagga
121 aaaattacaa aaattgggcc tgaaaatcca tataacactc caatatttgc cataaaaaag
181 aaggacagta ctaagtggag gaaattagtg gatttcaggg aactcaataa aagaactcaa
241 gacttttggg aggttcaatt aggaatacca cacccagcag gattamaaaa gaacaaatca
301 gtgacartac tggatgtggg ggatgcatat ttttcagttc ctttagatga aggattcagg
361 aaatatactg cattcaccat acctagtaya aacaatgara caccaggaat tagatatcaa
421 tayaatgtgc ttccacaggg atggaaagga tcaccagcaa tattccagag tagcatgaca
481 aaaatcttag agccctttag ggcacaaaat ccagacatag tcatctatca atatgtggat
541 gacttatatg taggatctga tttagaaata gggcagcaca gagcaaaaat agaggaatta
601 agagaacatt tattaaagtg gggattcacc acaccagata agaaacatca gaaagaaccc
661 ccatttcttt ggatggggta tgaactccat ccggatacat ggacagtaca gcctataaag
721 ctgccagaaa aagatagctg gactgtcaat gatatacaga
//
last modified: Tue May 31 10:56 2022