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LOCUS	    HQ012321		     760 bp    DNA     linear	VRL 19-APR-2011
DEFINITION  HIV-1 isolate 10ZA_SAVE2200 from South Africa reverse transcriptase
	    (pol) gene, partial cds
ACCESSION   HQ012321
VERSION     HQ012321.1 GI:328905145
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 760)
            Show all sequences for reference 1
  AUTHORS   El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
	    Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
	    Morris,L. and Kantor,R.
  TITLE     Viremia and drug resistance among HIV-1 patients on antiretroviral
	    treatment: a cross-sectional study in Soweto, South Africa
  JOURNAL   AIDS 24 (11), 1679-1687 (2010)
  PUBMED    20453629
REFERENCE   2 (bases 1 to 760)
            Show all sequences for reference 2
  AUTHORS   El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
	    Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
	    Morris,L. and Kantor,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2010) National Institute for Communicable
	    Diseases (NICD), Virus Research Unit, Private Bag X4, Johannesburg,
	    Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
FEATURES             Location/Qualifiers
     source	     1..760
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="10ZA_SAVE2200"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="08-Aug-2008"
     gene	     <1..>760
		     /gene="pol"
     CDS	     <1..>760
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AEB54848.1"
		     /db_xref="GI:328905146"
		     /translation="ETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITK
		     IGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLXKNKSVT
		     XLDVGDAYFSVPLDEGFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAIFQSSMT
		     KILEPFRAQNPDIVIYQYVDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQK
		     EPPFLWMGYELHPDTWTVQPIKLPEKDSWTVNDIQ"
BASE COUNT	303 a	 126 c	  160 g    166 t      5 other
ORIGIN
       1 gaaactgtac cagtaaaatt aaagccagga atggacgggc caaaggttaa acaatggccc 
      61 ttgacagaag aaaaaataaa agcattaaca gcaatttgtg aagaaatgga gaaggaagga 
     121 aaaattacaa aaattgggcc tgaaaatcca tataacactc caatatttgc cataaaaaag 
     181 aaggacagta ctaagtggag gaaattagtg gatttcaggg aactcaataa aagaactcaa 
     241 gacttttggg aggttcaatt aggaatacca cacccagcag gattamaaaa gaacaaatca 
     301 gtgacartac tggatgtggg ggatgcatat ttttcagttc ctttagatga aggattcagg 
     361 aaatatactg cattcaccat acctagtaya aacaatgara caccaggaat tagatatcaa 
     421 tayaatgtgc ttccacaggg atggaaagga tcaccagcaa tattccagag tagcatgaca 
     481 aaaatcttag agccctttag ggcacaaaat ccagacatag tcatctatca atatgtggat 
     541 gacttatatg taggatctga tttagaaata gggcagcaca gagcaaaaat agaggaatta 
     601 agagaacatt tattaaagtg gggattcacc acaccagata agaaacatca gaaagaaccc 
     661 ccatttcttt ggatggggta tgaactccat ccggatacat ggacagtaca gcctataaag 
     721 ctgccagaaa aagatagctg gactgtcaat gatatacaga 
//
last modified: Tue May 31 10:56 2022


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