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LOCUS HQ012295 760 bp DNA linear VRL 19-APR-2011
DEFINITION HIV-1 isolate 10ZA_SAVE1219 from South Africa reverse transcriptase
(pol) gene, partial cds
ACCESSION HQ012295
VERSION HQ012295.1 GI:328905093
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 760)
Show all sequences for reference 1
AUTHORS El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
Morris,L. and Kantor,R.
TITLE Viremia and drug resistance among HIV-1 patients on antiretroviral
treatment: a cross-sectional study in Soweto, South Africa
JOURNAL AIDS 24 (11), 1679-1687 (2010)
PUBMED 20453629
REFERENCE 2 (bases 1 to 760)
Show all sequences for reference 2
AUTHORS El-Khatib,Z., DeLong,A.K., Katzenstein,D., Ekstrom,A.M.,
Ledwaba,J., Mohapi,L., Laher,F., Petzold,M., Morris,L. and
Kantor,R.
TITLE Drug resistance patterns and virus re-suppression among HIV-1
subtype C infected patients receiving non-nucleoside reverse
transcriptase inhibitors in South Africa.
JOURNAL J AIDS Clin Res. 2011 Feb 18;2(117). pii: 1000117.
PUBMED 21927716
REFERENCE 3 (bases 1 to 760)
Show all sequences for reference 3
AUTHORS El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
Morris,L. and Kantor,R.
TITLE Direct Submission
JOURNAL Submitted (03-AUG-2010) National Institute for Communicable
Diseases (NICD), Virus Research Unit, Private Bag X4, Johannesburg,
Gauteng 2131, South Africa
REFERENCE 4
Show all sequences for reference 4
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
FEATURES Location/Qualifiers
source 1..760
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="10ZA_SAVE1219"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="06-May-2008"
gene <1..>760
/gene="pol"
CDS <1..>760
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AEB54822.1"
/db_xref="GI:328905094"
/translation="ETVPVKLKPGMDGPXVKQWPLTEEKLKALIEICKEMEKEGKISK
IGPENPYNTPVFXIKKKDSTKWRKLXDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVT
ILDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGLRYQYNVLPQGWKGSPAIFQSSMT
KILEPFRTQNPEIVIYQYVDDLYVGSDLEIGQHRAKVEELRDHLLKWGFXTPDKKXQK
EPPFXWMGYELHPDKWTVQPIQLPEKDSWTVNDIQ"
BASE COUNT 304 a 126 c 155 g 169 t 6 other
ORIGIN
1 gaaactgtac cagtaaaatt aaagccagga atggatggcc caarggttaa acaatggcca
61 ttgacagaag aaaaattaaa agcattaata gaaatttgta aagaaatgga aaaggaagga
121 aaaatttcaa aaattgggcc tgaaaatcca tataacaccc cagtatttgy cataaaaaag
181 aaggacagta ctaagtggag aaaattarta gatttcagag aactcaataa gagaactcaa
241 gacttttggg aagttcaact aggaatacca cacccagcag gattaaaaaa gaataaatca
301 gtgacaatac tggatgtggg ggatgcatat ttttcagttc ctttagatga aggcttcagg
361 aaatatactg cattcaccat acctagtata aataatgaaa caccaggact tagatatcaa
421 tataatgtgc ttccacaggg atggaaagga tcaccagcaa tattccagag tagcatgaca
481 aaaatcctag agcccttcag gacacaaaac ccagaaatag tcatctatca atatgtggat
541 gacttgtatg taggatctga cttggaaata gggcaacata gagcaaaggt agaggagtta
601 agagaccatc tattaaagtg gggatttayc acaccagaca aaaaayatca gaaagaaccc
661 ccatttcktt ggatgggata tgaactccat cctgacaaat ggacagtaca gcctatccag
721 ttgccagaaa aggatagctg gactgttaat gatatacaga
//
last modified: Tue May 31 10:56 2022