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LOCUS	    HQ009597		    1015 bp    RNA     linear	VRL 10-SEP-2010
DEFINITION  HIV-1 isolate BG-05-639 from Tanzania pol protein (pol) gene,
	    partial cds
ACCESSION   HQ009597
VERSION     HQ009597.1 GI:302347682
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1015)
            Show all sequences for reference 1
  AUTHORS   Yang,C., McNulty,A., Diallo,K., Zhang,J., Titanji,B., Kassim,S.,
	    Wadonda-Kabondo,N., Aberle-Grasse,J., Kibuka,T., Ndumbe,P.M.,
	    Vedapuri,S., Zhou,Z., Chilima,B. and Nkengasong,J.N.
  TITLE     Development and Application of a Broadly Sensitive
	    Dried-Blood-Spot-Based Genotyping Assay for Global Surveillance of
	    HIV-1 Drug Resistance
  JOURNAL   J. Clin. Microbiol. 48 (9), 3158-3164 (2010)
  PUBMED    20660209
REFERENCE   2 (bases 1 to 1015)
            Show all sequences for reference 2
  AUTHORS   Yang,C., McNulty,A., Diallo,K., Zhang,J., Titanji,B., Kassim,S.,
	    Wadonda-Kabondo,N., Aberle-Grasse,J., Kibuka,T., Ndumbe,P.M.,
	    Vedapuri,S., Zhou,Z., Chilima,B. and Nkengasong,J.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2010) Division of Global AIDS, NCHHSTP, Centers
	    for Disease Control and Prevention, 1600 Clifton Road, Mail stop
	    A-11, Atlanta, GA 30333, USA
FEATURES             Location/Qualifiers
     source	     1..1015
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BG-05-639"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Tanzania"
     gene	     <1..>1015
		     /gene="pol"
     CDS	     <1..>1015
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADL27869.1"
		     /db_xref="GI:302347683"
		     /translation="IKVGGQEKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKV
		     RQYDQIPIEICGKKALGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPG
		     MDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRK
		     LVDFRELNKRTQDFWEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVPLDENFRKYTAFT
		     IPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPGIVIYQYMDDLYV
		     GSDLEIGQHRAKIEELRDHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLP
		     DKDS"
BASE COUNT	402 a	 161 c	  220 g    232 t
ORIGIN
       1 ataaaagtag ggggacagga aaaagaggct ctcttagata caggagcaga tgatacagta 
      61 ttagaagaaa taaatttgcc aggaaaatgg aaaccaaaaa tgataggagg aattggaggt 
     121 tttatcaaag taagacagta tgatcaaata cctatagaaa tttgtggaaa aaaggcttta 
     181 ggtacagtac tagtaggacc tacacctgtc aacataattg gaaggaatct gttgactcag 
     241 cttggatgca cactaaattt tccaattagt cccattgaaa ctgtaccagt aaaattaaag 
     301 ccaggaatgg atggcccaaa ggttaaacaa tggccattga cagaagaaaa aataaaagca 
     361 ttaacagcaa tttgtgaaga aatggagaag gaaggaaaaa ttacaaaaat tgggcctgaa 
     421 aatccatata acactccagt atttgctata aaaaagaaag acagtactaa gtggagaaaa 
     481 ttagtagatt tcagggaact caataaaaga actcaagact tttgggaagt tcaattaggg 
     541 ataccacacc cagcagggtt aaaaaagaaa aggtcagtga cagtactgga tgtgggggat 
     601 gcatatttct cagttccttt agatgaaaac tttaggaaat atactgcatt caccataccc 
     661 agtataaaca atgaaacacc aggaattagg tatcagtata atgtacttcc acagggatgg 
     721 aaaggatcac cagcaatatt ccagagcagc atgacaaaaa tcttagagcc ctttagagca 
     781 caaaacccag gaatagttat ctatcaatat atggatgact tgtatgtagg atctgactta 
     841 gaaatagggc aacatagagc aaagatagag gagttaagag atcatttgtt gaagtgggga 
     901 tttaccacac cagacaagaa acatcagaaa gaacccccat ttctgtggat ggggtatgaa 
     961 ctccatcctg acaaatggac agtacagcct atacaattgc cagacaagga tagct
//
last modified: Tue May 31 10:56 2022


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