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LOCUS HQ009597 1015 bp RNA linear VRL 10-SEP-2010
DEFINITION HIV-1 isolate BG-05-639 from Tanzania pol protein (pol) gene,
partial cds
ACCESSION HQ009597
VERSION HQ009597.1 GI:302347682
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1015)
Show all sequences for reference 1
AUTHORS Yang,C., McNulty,A., Diallo,K., Zhang,J., Titanji,B., Kassim,S.,
Wadonda-Kabondo,N., Aberle-Grasse,J., Kibuka,T., Ndumbe,P.M.,
Vedapuri,S., Zhou,Z., Chilima,B. and Nkengasong,J.N.
TITLE Development and Application of a Broadly Sensitive
Dried-Blood-Spot-Based Genotyping Assay for Global Surveillance of
HIV-1 Drug Resistance
JOURNAL J. Clin. Microbiol. 48 (9), 3158-3164 (2010)
PUBMED 20660209
REFERENCE 2 (bases 1 to 1015)
Show all sequences for reference 2
AUTHORS Yang,C., McNulty,A., Diallo,K., Zhang,J., Titanji,B., Kassim,S.,
Wadonda-Kabondo,N., Aberle-Grasse,J., Kibuka,T., Ndumbe,P.M.,
Vedapuri,S., Zhou,Z., Chilima,B. and Nkengasong,J.N.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2010) Division of Global AIDS, NCHHSTP, Centers
for Disease Control and Prevention, 1600 Clifton Road, Mail stop
A-11, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..1015
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BG-05-639"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Tanzania"
gene <1..>1015
/gene="pol"
CDS <1..>1015
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADL27869.1"
/db_xref="GI:302347683"
/translation="IKVGGQEKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKV
RQYDQIPIEICGKKALGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPG
MDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRK
LVDFRELNKRTQDFWEVQLGIPHPAGLKKKRSVTVLDVGDAYFSVPLDENFRKYTAFT
IPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPGIVIYQYMDDLYV
GSDLEIGQHRAKIEELRDHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLP
DKDS"
BASE COUNT 402 a 161 c 220 g 232 t
ORIGIN
1 ataaaagtag ggggacagga aaaagaggct ctcttagata caggagcaga tgatacagta
61 ttagaagaaa taaatttgcc aggaaaatgg aaaccaaaaa tgataggagg aattggaggt
121 tttatcaaag taagacagta tgatcaaata cctatagaaa tttgtggaaa aaaggcttta
181 ggtacagtac tagtaggacc tacacctgtc aacataattg gaaggaatct gttgactcag
241 cttggatgca cactaaattt tccaattagt cccattgaaa ctgtaccagt aaaattaaag
301 ccaggaatgg atggcccaaa ggttaaacaa tggccattga cagaagaaaa aataaaagca
361 ttaacagcaa tttgtgaaga aatggagaag gaaggaaaaa ttacaaaaat tgggcctgaa
421 aatccatata acactccagt atttgctata aaaaagaaag acagtactaa gtggagaaaa
481 ttagtagatt tcagggaact caataaaaga actcaagact tttgggaagt tcaattaggg
541 ataccacacc cagcagggtt aaaaaagaaa aggtcagtga cagtactgga tgtgggggat
601 gcatatttct cagttccttt agatgaaaac tttaggaaat atactgcatt caccataccc
661 agtataaaca atgaaacacc aggaattagg tatcagtata atgtacttcc acagggatgg
721 aaaggatcac cagcaatatt ccagagcagc atgacaaaaa tcttagagcc ctttagagca
781 caaaacccag gaatagttat ctatcaatat atggatgact tgtatgtagg atctgactta
841 gaaatagggc aacatagagc aaagatagag gagttaagag atcatttgtt gaagtgggga
901 tttaccacac cagacaagaa acatcagaaa gaacccccat ttctgtggat ggggtatgaa
961 ctccatcctg acaaatggac agtacagcct atacaattgc cagacaagga tagct
//
last modified: Tue May 31 10:56 2022