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LOCUS	    HQ009578		    1015 bp    RNA     linear	VRL 08-SEP-2010
DEFINITION  HIV-1 isolate CNsd05141 from China pol protein (pol) gene, partial
	    cds
ACCESSION   HQ009578
VERSION     HQ009578.1 GI:302347644
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1015)
            Show all sequences for reference 1
  AUTHORS   Yang,C., McNulty,A., Diallo,K., Zhang,J., Titanji,B., Kassim,S.,
	    Wadonda-Kabondo,N., Aberle-Grasse,J., Kibuka,T., Ndumbe,P.M.,
	    Vedapuri,S., Zhou,Z., Chilima,B. and Nkengasong,J.N.
  TITLE     Development and Application of a Broadly Sensitive
	    Dried-Blood-Spot-Based Genotyping Assay for Global Surveillance of
	    HIV-1 Drug Resistance
  JOURNAL   J. Clin. Microbiol. 48 (9), 3158-3164 (2010)
  PUBMED    20660209
REFERENCE   2 (bases 1 to 1015)
            Show all sequences for reference 2
  AUTHORS   Yang,C., McNulty,A., Diallo,K. and Zhang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2010) Division of Global AIDS, NCHHSTP, Centers
	    for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA
	    30333, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Zhang,J., Kang,D., Lin,B., Sun,X., Fu,J., Bi,Z., Nkengasong,J.N.
	    and Yang,C.
  TITLE     HIV Type 1 Virological Response and Prevalence of HIV Type 1 Drug
	    Resistance Among Patients Receiving Antiretroviral Therapy,
	    Shandong, China.
  JOURNAL   AIDS Res Hum Retroviruses. 2012 Jun 11.
  PUBMED    22563717
FEATURES             Location/Qualifiers
     source	     1..1015
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CNsd05141"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="China: Shandong"
		     /collection_date="Mar-2007"
		     /note="group: M"
     gene	     <1..>1015
		     /gene="pol"
     CDS	     <1..>1015
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADL27850.1"
		     /db_xref="GI:302347645"
		     /translation="IKIGGQQKEALLDTGADDTVLEEMHLPGRWKPKMIGGIGGFIKV
		     RQYDQILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPG
		     MDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRK
		     LVDFRELNKRTQDFWEVQLGIPHPAGLXKKKSMTILDVGDAYFSVPLYEDFRKYTAFT
		     IPSTNNEKPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPDLVIYQYVDDLYV
		     GSDLEIGQHRTKVEELRQHLLRWGLXTPDKKHQKEPPLLWMGYELHPDKWTVQPIMLP
		     EKDS"
BASE COUNT	403 a	 162 c	  209 g    238 t      3 other
ORIGIN
       1 ataaagatag ggggccaaca aaaggaagct ctattagata caggagcaga tgatacagta 
      61 ttagaagaaa tgcatttacc aggaagatgg aaaccaaaaa tgataggggg aattggaggt 
     121 tttatcaaag taagacagta tgatcagata ctcatagaaa tttgcggaca taaagctata 
     181 ggtacagtat taataggacc tacacctgtc aacataattg gaagaaatct gttgactcag 
     241 attggctgca ctttaaattt tcccattagt cctattgaaa ctgtaccagt aaaattaaag 
     301 ccaggtatgg atggcccaaa agttaaacaa tggccattga cagaagaaaa aataaaagca 
     361 ttagtagaaa tttgtacaga aatggaaaag gaaggaaaaa tttcaaaaat agggcctgaa 
     421 aatccataca atactccagt atttgcaata aagaaaaaag acagtactaa atggagaaaa 
     481 ttagtagatt tcagagaact caataaaaga actcaagact tctgggaggt tcaattagga 
     541 ataccacatc ccgcagggtt amamaagaaa aaatcaatga caatactgga tgtgggtgat 
     601 gcatattttt cagttccctt atatgaggac tttaggaagt atactgcatt taccatacct 
     661 agtacaaaca atgagaaacc agggattagg tatcagtaca atgtgcttcc acagggatgg 
     721 aaaggatcac cagcaatatt ccaaagtagc atgacaaaaa tcttagatcc ttttagaaaa 
     781 caaaatccag acttagtgat ctatcagtac gtggatgatt tgtatgtagg atctgactta 
     841 gaaatagggc aacatagaac aaaagtagag gaactgagac aacatctgtt gaggtgggga 
     901 ttatycacac cagacaaaaa acatcagaaa gaacctccac tcctttggat gggctatgaa 
     961 ctccatccag ataaatggac agtacaacct ataatgctgc cagaaaagga cagct
//
last modified: Tue May 31 10:56 2022


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