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LOCUS HQ009578 1015 bp RNA linear VRL 08-SEP-2010
DEFINITION HIV-1 isolate CNsd05141 from China pol protein (pol) gene, partial
cds
ACCESSION HQ009578
VERSION HQ009578.1 GI:302347644
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1015)
Show all sequences for reference 1
AUTHORS Yang,C., McNulty,A., Diallo,K., Zhang,J., Titanji,B., Kassim,S.,
Wadonda-Kabondo,N., Aberle-Grasse,J., Kibuka,T., Ndumbe,P.M.,
Vedapuri,S., Zhou,Z., Chilima,B. and Nkengasong,J.N.
TITLE Development and Application of a Broadly Sensitive
Dried-Blood-Spot-Based Genotyping Assay for Global Surveillance of
HIV-1 Drug Resistance
JOURNAL J. Clin. Microbiol. 48 (9), 3158-3164 (2010)
PUBMED 20660209
REFERENCE 2 (bases 1 to 1015)
Show all sequences for reference 2
AUTHORS Yang,C., McNulty,A., Diallo,K. and Zhang,J.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2010) Division of Global AIDS, NCHHSTP, Centers
for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA
30333, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Zhang,J., Kang,D., Lin,B., Sun,X., Fu,J., Bi,Z., Nkengasong,J.N.
and Yang,C.
TITLE HIV Type 1 Virological Response and Prevalence of HIV Type 1 Drug
Resistance Among Patients Receiving Antiretroviral Therapy,
Shandong, China.
JOURNAL AIDS Res Hum Retroviruses. 2012 Jun 11.
PUBMED 22563717
FEATURES Location/Qualifiers
source 1..1015
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CNsd05141"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China: Shandong"
/collection_date="Mar-2007"
/note="group: M"
gene <1..>1015
/gene="pol"
CDS <1..>1015
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADL27850.1"
/db_xref="GI:302347645"
/translation="IKIGGQQKEALLDTGADDTVLEEMHLPGRWKPKMIGGIGGFIKV
RQYDQILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPG
MDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRK
LVDFRELNKRTQDFWEVQLGIPHPAGLXKKKSMTILDVGDAYFSVPLYEDFRKYTAFT
IPSTNNEKPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPDLVIYQYVDDLYV
GSDLEIGQHRTKVEELRQHLLRWGLXTPDKKHQKEPPLLWMGYELHPDKWTVQPIMLP
EKDS"
BASE COUNT 403 a 162 c 209 g 238 t 3 other
ORIGIN
1 ataaagatag ggggccaaca aaaggaagct ctattagata caggagcaga tgatacagta
61 ttagaagaaa tgcatttacc aggaagatgg aaaccaaaaa tgataggggg aattggaggt
121 tttatcaaag taagacagta tgatcagata ctcatagaaa tttgcggaca taaagctata
181 ggtacagtat taataggacc tacacctgtc aacataattg gaagaaatct gttgactcag
241 attggctgca ctttaaattt tcccattagt cctattgaaa ctgtaccagt aaaattaaag
301 ccaggtatgg atggcccaaa agttaaacaa tggccattga cagaagaaaa aataaaagca
361 ttagtagaaa tttgtacaga aatggaaaag gaaggaaaaa tttcaaaaat agggcctgaa
421 aatccataca atactccagt atttgcaata aagaaaaaag acagtactaa atggagaaaa
481 ttagtagatt tcagagaact caataaaaga actcaagact tctgggaggt tcaattagga
541 ataccacatc ccgcagggtt amamaagaaa aaatcaatga caatactgga tgtgggtgat
601 gcatattttt cagttccctt atatgaggac tttaggaagt atactgcatt taccatacct
661 agtacaaaca atgagaaacc agggattagg tatcagtaca atgtgcttcc acagggatgg
721 aaaggatcac cagcaatatt ccaaagtagc atgacaaaaa tcttagatcc ttttagaaaa
781 caaaatccag acttagtgat ctatcagtac gtggatgatt tgtatgtagg atctgactta
841 gaaatagggc aacatagaac aaaagtagag gaactgagac aacatctgtt gaggtgggga
901 ttatycacac cagacaaaaa acatcagaaa gaacctccac tcctttggat gggctatgaa
961 ctccatccag ataaatggac agtacaacct ataatgctgc cagaaaagga cagct
//
last modified: Tue May 31 10:56 2022