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LOCUS HM638516 2562 bp DNA linear VRL 29-AUG-2010
DEFINITION HIV-1 isolate 700010501_A7_BL from USA envelope glycoprotein (env)
gene, complete cds
ACCESSION HM638516
VERSION HM638516.1 GI:304417732
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2562)
Show all sequences for reference 1
AUTHORS Anderson,J.A., Ping,L.-H., Dibben,O., Jabara,C.B., Arney,L.,
Kincer,L., Tang,Y., Hobbs,M., Hoffman,I., Kazembe,P., Jones,C.D.,
Borrow,P., Fiscus,S., Cohen,M.S. and Swanstrom,R.
TITLE HIV-1 Populations in Semen Arise through Multiple Mechanisms.
JOURNAL PLoS Pathog. 2010 Aug 19;6(8). pii: e1001053.
PUBMED 20808902
REFERENCE 2 (bases 1 to 2562)
Show all sequences for reference 2
AUTHORS Anderson,J., Ping,L.-H., Dibben,O., Jabara,C., Arney,L., Kincer,L.,
Tang,Y., Hobbs,M., Hoffman,I., Kazembe,P., Jones,C., Borrow,P.,
Fiscus,S., Cohen,M. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2010) Internal Medicine, University of North
Carolina, CB#7030, 130 Mason Farm Rd., Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..2562
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="700010501_A7_BL"
/isolation_source="semen"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="18-Feb-2008"
gene 1..2562
/gene="env"
CDS 1..2562
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM30189.1"
/db_xref="GI:304417733"
/translation="MRVMGIKKNWQCWKWGILLLGMLMISSATGQLWVTVYYGVPVWK
EATTTLFCASDAKAYDTEVHNIWATHACVPTDPNPQEIPLKNVTESFNMWKNNMVEQM
HEDIISLWDQSLKPCVSLTPLCVTLQCTDYHRTNGNNTDNRTDPSSSPVEREIKNCSF
NITTKRRDKMSKEYALFYKSDIVQINETGNDNNSYILTSCNTSVITQACPKVSFEPIP
IHYCTPAGFAILKCNDAKFNGSGQCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVI
RSENFSDNVKTIIVQLNESVEINCTRPNNNTRKSITIGPGRAFYATGDIIGDIRQAHC
NISKEKWNKTLKKVVDKLRQQFENKTIIFNQSSGGDPEIVMHKFICGGEFFYCNSTKL
FNSTWNGTRTEESKGENDTITLPCRIKQFINMWQRVGKAMYAPPISGKIRCSSNITGL
LLTRDGGINTTNETFRPGGGNMRDNWRSELYKYKVVRVEPLGVAPTKAKRRVVQREKR
AVTFGAVFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLT
VWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKSLDMIWNNMT
WMEWEREIDNYTGLIYNLIEQSQNQQEINEQDLLKLDQWASLWNWFNISNWLWYIKIF
IMIIGGLVGLRIVFIVLSIVNRVRQGYSPLSFQTHHPAPRGPDRPEGIEEEGGERDRG
RSGPLVDGFLAIFWVDLRSLFLFSYHLLRDFLLIVTRTVELLGRRGWEALKYGWNLLQ
YWSQELRNSAISLLDAIAIAVAGGTDRVIEVIQRVFRGILHIPTRIRQGLERLLL"
BASE COUNT 896 a 433 c 597 g 636 t
ORIGIN
1 atgagagtga tggggatcaa gaagaattgg caatgctgga aatggggcat cttgctcctt
61 gggatgttaa tgatcagtag tgctacagga caattgtggg tcacagtcta ttatggggta
121 cctgtgtgga aagaagcaac taccactcta ttttgtgcat cagatgctaa agcatatgac
181 acagaggtac ataatatttg ggctacacat gcctgtgtac ccacagaccc caacccacaa
241 gaaataccat tgaaaaatgt gacagaaagt tttaacatgt ggaaaaataa catggtagaa
301 caaatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg tgtaagctta
361 accccactct gtgttactct acaatgcact gattatcata gaactaatgg taataatact
421 gataatagga ctgatcctag tagtagtccc gtggaaagag aaataaaaaa ttgctctttc
481 aatatcacca caaagagaag agataagatg agtaaagaat atgccctttt ttataagtct
541 gatatagtac aaataaatga aacaggaaat gataataata gctatatatt gacaagttgt
601 aacacttcag ttattacaca agcctgtcca aaggtatcct ttgagccaat tcccatacat
661 tattgtaccc cggctggttt tgcgattcta aagtgtaatg atgcaaagtt caatggatca
721 ggacaatgca aaaatgtcag cacagtacaa tgtacacatg gaattaggcc agtagtatca
781 actcaactgc tgttaaatgg cagcctagca gaagaagaga tagtaattag atctgaaaat
841 ttctcggata atgtcaaaac cataatagta cagttgaatg aatctgtaga aattaattgc
901 acaagaccca acaacaatac aagaaaaagt ataactatag gaccagggag ggcattttat
961 gcaacaggag acataatagg agatataaga caagcacact gcaacattag taaagagaaa
1021 tggaataaaa ctttaaaaaa ggtagttgac aaattaagac aacaatttga gaataaaaca
1081 ataatcttta atcaatcctc aggaggggac ccagaaattg taatgcacaa gtttatttgt
1141 ggaggggaat ttttctactg taattcaaca aaactgttta atagtacctg gaatgggact
1201 aggactgaag agagcaaggg agaaaatgac acaatcacac tcccatgcag aataaaacaa
1261 tttataaaca tgtggcagag agtaggaaaa gcaatgtatg cccctcctat cagcggaaaa
1321 attagatgtt catcaaatat tacagggctg ttattaacaa gagatggtgg cattaacacc
1381 accaacgaga ccttcagacc tggaggagga aatatgaggg acaattggag aagtgaatta
1441 tataaatata aagtagtaag agttgaacca ttaggagtag cacctaccaa ggcaaagaga
1501 agagtggtgc aaagagaaaa aagagcagtg acatttggag ctgtgttcct tgggttcttg
1561 ggagcagcag gaagcactat gggcgcagcg tcagtgacgc tgacggtaca ggccagacaa
1621 ttattgtctg gtatagtgca acagcaaagt aatttgctga gggctattga ggcgcaacag
1681 catctgttgc aactcacagt ctggggcatc aagcagctcc aggcaagagt cctggctgtg
1741 gagagatacc tacgggatca acagctcctg gggatttggg gttgctctgg aaaactcatt
1801 tgcaccacta ctgtgccttg gaatgctagc tggagtaata aatctctgga tatgatttgg
1861 aataacatga cctggatgga gtgggaaagg gaaattgaca attacacagg cttaatatac
1921 aatttaattg aacaatcgca aaaccagcaa gaaataaatg aacaagactt attgaaatta
1981 gatcaatggg caagtttgtg gaattggttt aacatatcaa actggctgtg gtatataaaa
2041 atattcataa tgataatagg aggcttggta ggtttaagaa tagtttttat tgtactttct
2101 atagtgaata gagttaggca gggatactca ccattatcgt ttcagaccca ccacccagcc
2161 ccgaggggac ccgacaggcc cgaaggaatc gaagaagaag gtggagagag agacagaggc
2221 agatccggac cattagtgga tggattctta gcaattttct gggtcgacct acggagcctg
2281 ttccttttca gctaccacct cttgagagac tttctcttga ttgtaacgag gactgtggaa
2341 cttctgggac gcagggggtg ggaagccctc aagtacgggt ggaatctcct ccaatattgg
2401 agtcaggaac taaggaatag tgctattagt ttgcttgatg ccatagccat agcagtagct
2461 ggggggacag atagggttat agaagtaata caaagagttt ttagaggtat cctccatata
2521 cctacaagaa taagacaggg cttagaaaga cttttgctgt aa
//
last modified: Tue May 31 10:56 2022