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LOCUS	    HM638498		    2613 bp    DNA     linear	VRL 29-AUG-2010
DEFINITION  HIV-1 isolate 700010333_D8_S from USA envelope glycoprotein (env)
	    gene, complete cds
ACCESSION   HM638498
VERSION     HM638498.1 GI:304417696
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2613)
            Show all sequences for reference 1
  AUTHORS   Anderson,J.A., Ping,L.-H., Dibben,O., Jabara,C.B., Arney,L.,
	    Kincer,L., Tang,Y., Hobbs,M., Hoffman,I., Kazembe,P., Jones,C.D.,
	    Borrow,P., Fiscus,S., Cohen,M.S. and Swanstrom,R.
  TITLE     HIV-1 Populations in Semen Arise through Multiple Mechanisms.
  JOURNAL   PLoS Pathog. 2010 Aug 19;6(8). pii: e1001053.
  PUBMED    20808902
REFERENCE   2 (bases 1 to 2613)
            Show all sequences for reference 2
  AUTHORS   Anderson,J., Ping,L.-H., Dibben,O., Jabara,C., Arney,L., Kincer,L.,
	    Tang,Y., Hobbs,M., Hoffman,I., Kazembe,P., Jones,C., Borrow,P.,
	    Fiscus,S., Cohen,M. and Swanstrom,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2010) Internal Medicine, University of North
	    Carolina, CB#7030, 130 Mason Farm Rd., Chapel Hill, NC 27599, USA
FEATURES             Location/Qualifiers
     source	     1..2613
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="700010333_D8_S"
		     /isolation_source="semen"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="26-Sep-2007"
     gene	     1..2613
		     /gene="env"
     CDS	     1..2613
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADM30171.1"
		     /db_xref="GI:304417697"
		     /translation="MKVKGIRKNYLWRWGTMLLGMLMICSAAEKFWVTVYYGVPVWKE
		     ANTTLFCASDAKAYDTEMHNVWATHACVPTDPNPQEIDLENVTEEFNMWKNDMVEQMH
		     EDVINLWDQSLKPCVKLTPLCVTLICNKLNDTILANLTNHGNSSSGNITDEMKNCTFN
		     VSTSVKDKMEKKYAFFYNLDIVQITDSNNRQINDSNNSITDSTSYRLISCNTSVLTQA
		     CPKVSFEPIPIHYCAPAGFAILKCKDETFQGQGNCSNVSTVQCTHGIRPVVSTQLLLN
		     GSLAEKEVVIRSENFSDNAKTIIVQLNKTVVINCTRPNNNTSTGIHMGPGKVFYATER
		     IIGDIRKAHCTINGTEWNNTLGQVATKLREQFNKSKIAFKPSSGGDPEIVMHTFNCGG
		     EFFYCNTTKLFSSTWDENTTLERPNDTEIITLPCRIKQIINMWQAVGKAIYAPPISGQ
		     INCSSNITGLLLTRDGGYNGTNDTQTETFRPQGGNMKDNWRSELYKYKVVKIEPLGLA
		     PTKAKRRVVQREKRAVGIGAMFFGLLGAAGSTMGAASVTLTVQARKLLSGIVQQQNNL
		     LRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGMWGCSGKLICTTAVPWNTS
		     WSKSTNTSLDKIWDTMTWMQWEKEIDNYTGLIYTLLEDSQIQQDKNEQELLELDKWAS
		     LWNWFNITNWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSFQTHLPAQRG
		     PDRPGGIEEEGGERDRDRSSPLVTGFFALIWVDLRSLCLFSYHRLRDLLLIVTRIVEL
		     LGRRGWEILKLWWSLLQYWSQELKNSAVSLFDAIAIAVAEGTDRIIEGLRRVFRAVLH
		     VPTRIRQGLERALL"
BASE COUNT	915 a	 452 c	  606 g    640 t
ORIGIN
       1 atgaaagtga aggggatcag gaagaattac ttatggagat ggggcacgat gctccttgga 
      61 atgttgatga tctgtagtgc tgcagagaaa ttttgggtca cagtttatta tggggtacct 
     121 gtgtggaaag aagcaaacac caccttattt tgtgcatcag atgctaaagc atatgataca 
     181 gagatgcata atgtttgggc cacacatgcc tgtgtaccca cagaccccaa cccacaagaa 
     241 atagacttag agaatgtgac agaagaattt aacatgtgga aaaatgacat ggtagaacag 
     301 atgcatgagg atgtaatcaa tttatgggat caaagcctaa agccatgtgt aaaattaact 
     361 ccactctgtg ttactttaat ttgcaataag ttaaatgata ctatcttagc aaatcttact 
     421 aatcatggca acagtagtag cgggaacata acggatgaaa tgaaaaactg cacgttcaat 
     481 gtctccacaa gtgtaaaaga taagatggag aaaaaatatg cattttttta taaccttgat 
     541 atagtacaaa taacagatag taataacaga caaataaacg atagtaataa cagcattact 
     601 gacagcacta gctataggtt gataagttgt aatacctcag tccttacgca ggcctgtcca 
     661 aaggtatcct ttgagccaat tcccatacat tattgtgccc cggctggatt tgcgattcta 
     721 aagtgtaagg atgaaacatt ccagggacaa ggaaattgtt caaatgtcag cacagtacaa 
     781 tgtacacatg gaattaggcc agtagtatcc acccaattgc tgttaaatgg cagtctagca 
     841 gaaaaggagg tagtaattag atctgaaaac ttctcggaca atgctaaaac cataatagta 
     901 cagctgaata aaactgtagt aattaactgt acaagaccta acaacaatac aagcacaggt 
     961 atacatatgg gaccaggaaa agtattttat gcaacagaaa gaataatagg agatataaga 
    1021 aaagcacact gtaccattaa tggaacagaa tggaataaca ctttaggaca ggtagctaca 
    1081 aaattaaggg aacaatttaa taaaagtaaa atagccttta agccctcctc gggaggggac 
    1141 ccagaaattg taatgcacac atttaattgt ggaggggaat ttttctactg taatacaaca 
    1201 aagctgttta gtagtacttg ggatgagaat actactttgg aaaggccaaa tgacactgaa 
    1261 ataatcactc tcccatgcag aataaaacaa attataaaca tgtggcaggc agtaggaaaa 
    1321 gcaatatatg cccctcccat cagtggacaa attaattgtt catcaaatat taccgggctg 
    1381 ctattaacaa gagatggtgg ttacaatggt acgaatgaca cccagaccga gaccttcaga 
    1441 cctcagggag gaaatatgaa agacaattgg agaagtgaat tatataaata taaagtagta 
    1501 aaaattgaac cattaggact agcacccacc aaggcaaaga gaagagtggt gcagagagaa 
    1561 aaaagagcag tgggaatagg agctatgttc tttgggctct tgggagcagc aggaagcacc 
    1621 atgggcgcag cgtcagtgac gctgacggta caggccagaa aattgttgtc tggtatagtg 
    1681 caacagcaga acaatctgct gagggctatt gaggcgcaac agcatatgtt gcaactcaca 
    1741 gtctggggca ttaagcagct ccaggcaaga gtcctagctg tggaaagata cctaaaggat 
    1801 caacagctcc tagggatgtg gggttgctct ggaaaactca tctgcaccac tgctgtgcct 
    1861 tggaatacta gttggagtaa gagtacgaat acatctctag ataagatttg ggataccatg 
    1921 acctggatgc agtgggaaaa agaaattgat aattacacag gtttaatata caccttgctt 
    1981 gaagactcgc aaatccaaca agacaaaaat gaacaagaat tattagaatt agataaatgg 
    2041 gcaagtttgt ggaattggtt taacataaca aactggctgt ggtatataaa aatattcata 
    2101 atgatagtag gaggcttaat aggtttaaga atagttttta ctatactttc tatagtgaat 
    2161 agagttaggc agggatactc accattatcg tttcagaccc acctcccagc acagagggga 
    2221 cccgacaggc ccggaggaat cgaagaagaa ggtggagaga gagacagaga cagatcaagt 
    2281 ccattagtga ccggattctt tgcacttatc tgggtcgacc tgcggagcct gtgcctcttc 
    2341 agctaccacc gcttgagaga cttactcttg attgtaacga ggattgtgga acttctggga 
    2401 cgcagggggt gggaaatcct caaactttgg tggagtctcc tacagtattg gagtcaggaa 
    2461 ctaaagaata gtgctgttag cttgtttgat gccatagcca tagcagtagc tgaagggaca 
    2521 gataggatta tagaaggatt aagaagagtt tttagagcag ttctccacgt acctacaaga 
    2581 ataagacagg gcttggaaag ggctttgcta taa
//
last modified: Tue May 31 10:56 2022


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