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LOCUS HM638498 2613 bp DNA linear VRL 29-AUG-2010
DEFINITION HIV-1 isolate 700010333_D8_S from USA envelope glycoprotein (env)
gene, complete cds
ACCESSION HM638498
VERSION HM638498.1 GI:304417696
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2613)
Show all sequences for reference 1
AUTHORS Anderson,J.A., Ping,L.-H., Dibben,O., Jabara,C.B., Arney,L.,
Kincer,L., Tang,Y., Hobbs,M., Hoffman,I., Kazembe,P., Jones,C.D.,
Borrow,P., Fiscus,S., Cohen,M.S. and Swanstrom,R.
TITLE HIV-1 Populations in Semen Arise through Multiple Mechanisms.
JOURNAL PLoS Pathog. 2010 Aug 19;6(8). pii: e1001053.
PUBMED 20808902
REFERENCE 2 (bases 1 to 2613)
Show all sequences for reference 2
AUTHORS Anderson,J., Ping,L.-H., Dibben,O., Jabara,C., Arney,L., Kincer,L.,
Tang,Y., Hobbs,M., Hoffman,I., Kazembe,P., Jones,C., Borrow,P.,
Fiscus,S., Cohen,M. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (08-JUL-2010) Internal Medicine, University of North
Carolina, CB#7030, 130 Mason Farm Rd., Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..2613
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="700010333_D8_S"
/isolation_source="semen"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="26-Sep-2007"
gene 1..2613
/gene="env"
CDS 1..2613
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM30171.1"
/db_xref="GI:304417697"
/translation="MKVKGIRKNYLWRWGTMLLGMLMICSAAEKFWVTVYYGVPVWKE
ANTTLFCASDAKAYDTEMHNVWATHACVPTDPNPQEIDLENVTEEFNMWKNDMVEQMH
EDVINLWDQSLKPCVKLTPLCVTLICNKLNDTILANLTNHGNSSSGNITDEMKNCTFN
VSTSVKDKMEKKYAFFYNLDIVQITDSNNRQINDSNNSITDSTSYRLISCNTSVLTQA
CPKVSFEPIPIHYCAPAGFAILKCKDETFQGQGNCSNVSTVQCTHGIRPVVSTQLLLN
GSLAEKEVVIRSENFSDNAKTIIVQLNKTVVINCTRPNNNTSTGIHMGPGKVFYATER
IIGDIRKAHCTINGTEWNNTLGQVATKLREQFNKSKIAFKPSSGGDPEIVMHTFNCGG
EFFYCNTTKLFSSTWDENTTLERPNDTEIITLPCRIKQIINMWQAVGKAIYAPPISGQ
INCSSNITGLLLTRDGGYNGTNDTQTETFRPQGGNMKDNWRSELYKYKVVKIEPLGLA
PTKAKRRVVQREKRAVGIGAMFFGLLGAAGSTMGAASVTLTVQARKLLSGIVQQQNNL
LRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGMWGCSGKLICTTAVPWNTS
WSKSTNTSLDKIWDTMTWMQWEKEIDNYTGLIYTLLEDSQIQQDKNEQELLELDKWAS
LWNWFNITNWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSFQTHLPAQRG
PDRPGGIEEEGGERDRDRSSPLVTGFFALIWVDLRSLCLFSYHRLRDLLLIVTRIVEL
LGRRGWEILKLWWSLLQYWSQELKNSAVSLFDAIAIAVAEGTDRIIEGLRRVFRAVLH
VPTRIRQGLERALL"
BASE COUNT 915 a 452 c 606 g 640 t
ORIGIN
1 atgaaagtga aggggatcag gaagaattac ttatggagat ggggcacgat gctccttgga
61 atgttgatga tctgtagtgc tgcagagaaa ttttgggtca cagtttatta tggggtacct
121 gtgtggaaag aagcaaacac caccttattt tgtgcatcag atgctaaagc atatgataca
181 gagatgcata atgtttgggc cacacatgcc tgtgtaccca cagaccccaa cccacaagaa
241 atagacttag agaatgtgac agaagaattt aacatgtgga aaaatgacat ggtagaacag
301 atgcatgagg atgtaatcaa tttatgggat caaagcctaa agccatgtgt aaaattaact
361 ccactctgtg ttactttaat ttgcaataag ttaaatgata ctatcttagc aaatcttact
421 aatcatggca acagtagtag cgggaacata acggatgaaa tgaaaaactg cacgttcaat
481 gtctccacaa gtgtaaaaga taagatggag aaaaaatatg cattttttta taaccttgat
541 atagtacaaa taacagatag taataacaga caaataaacg atagtaataa cagcattact
601 gacagcacta gctataggtt gataagttgt aatacctcag tccttacgca ggcctgtcca
661 aaggtatcct ttgagccaat tcccatacat tattgtgccc cggctggatt tgcgattcta
721 aagtgtaagg atgaaacatt ccagggacaa ggaaattgtt caaatgtcag cacagtacaa
781 tgtacacatg gaattaggcc agtagtatcc acccaattgc tgttaaatgg cagtctagca
841 gaaaaggagg tagtaattag atctgaaaac ttctcggaca atgctaaaac cataatagta
901 cagctgaata aaactgtagt aattaactgt acaagaccta acaacaatac aagcacaggt
961 atacatatgg gaccaggaaa agtattttat gcaacagaaa gaataatagg agatataaga
1021 aaagcacact gtaccattaa tggaacagaa tggaataaca ctttaggaca ggtagctaca
1081 aaattaaggg aacaatttaa taaaagtaaa atagccttta agccctcctc gggaggggac
1141 ccagaaattg taatgcacac atttaattgt ggaggggaat ttttctactg taatacaaca
1201 aagctgttta gtagtacttg ggatgagaat actactttgg aaaggccaaa tgacactgaa
1261 ataatcactc tcccatgcag aataaaacaa attataaaca tgtggcaggc agtaggaaaa
1321 gcaatatatg cccctcccat cagtggacaa attaattgtt catcaaatat taccgggctg
1381 ctattaacaa gagatggtgg ttacaatggt acgaatgaca cccagaccga gaccttcaga
1441 cctcagggag gaaatatgaa agacaattgg agaagtgaat tatataaata taaagtagta
1501 aaaattgaac cattaggact agcacccacc aaggcaaaga gaagagtggt gcagagagaa
1561 aaaagagcag tgggaatagg agctatgttc tttgggctct tgggagcagc aggaagcacc
1621 atgggcgcag cgtcagtgac gctgacggta caggccagaa aattgttgtc tggtatagtg
1681 caacagcaga acaatctgct gagggctatt gaggcgcaac agcatatgtt gcaactcaca
1741 gtctggggca ttaagcagct ccaggcaaga gtcctagctg tggaaagata cctaaaggat
1801 caacagctcc tagggatgtg gggttgctct ggaaaactca tctgcaccac tgctgtgcct
1861 tggaatacta gttggagtaa gagtacgaat acatctctag ataagatttg ggataccatg
1921 acctggatgc agtgggaaaa agaaattgat aattacacag gtttaatata caccttgctt
1981 gaagactcgc aaatccaaca agacaaaaat gaacaagaat tattagaatt agataaatgg
2041 gcaagtttgt ggaattggtt taacataaca aactggctgt ggtatataaa aatattcata
2101 atgatagtag gaggcttaat aggtttaaga atagttttta ctatactttc tatagtgaat
2161 agagttaggc agggatactc accattatcg tttcagaccc acctcccagc acagagggga
2221 cccgacaggc ccggaggaat cgaagaagaa ggtggagaga gagacagaga cagatcaagt
2281 ccattagtga ccggattctt tgcacttatc tgggtcgacc tgcggagcct gtgcctcttc
2341 agctaccacc gcttgagaga cttactcttg attgtaacga ggattgtgga acttctggga
2401 cgcagggggt gggaaatcct caaactttgg tggagtctcc tacagtattg gagtcaggaa
2461 ctaaagaata gtgctgttag cttgtttgat gccatagcca tagcagtagc tgaagggaca
2521 gataggatta tagaaggatt aagaagagtt tttagagcag ttctccacgt acctacaaga
2581 ataagacagg gcttggaaag ggctttgcta taa
//
last modified: Tue May 31 10:56 2022