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LOCUS	    HM635544		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 5701_050208 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635544
VERSION     HM635544.1 GI:338227868
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="5701"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="5701_050208"
		     /country="Malawi"
		     /collection_date="02-May-2008"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90905.1"
		     /db_xref="GI:338227869"
		     /translation="PQITLWQRPLVTIIVGGQTKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALXEICXEMEREGKITKIGPENPYNTPVF
		     AIKKKGSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFRAQNPE
		     MVICQYMDDLYVASDLEITQHRAKIEKLREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQMCKLLRGTKALTDVV
		     PLTEEAELELAENREILKEPVHGVYYDPAKDLIAEIQKQGND"
BASE COUNT	517 a	 209 c	  279 g    291 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa tcgtaggggg ccagacaaag 
      61 gaggctctct tagacacagg agcagatgac acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgag 
     181 caaatactta tagaaatttg tgggaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcaacttg gatgcacayt aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa magaaatctg traagaaatg 
     421 gagagggaag gaaaaattac aaaaattggg cctgaaaatc catataatac tccagtattt 
     481 gccataaaaa agaagggcag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagayttttg ggaagttcaa ttaggaatac cacacccagc agggttagaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaagatttta ggaaatatac tgcattcact atacctagta taaacaatga aacaccaggg 
     721 gttaggtatc agtataatgt gcttccacag ggatggaaag gatcaccatc aatattccar 
     781 agtagcatga caaaaatctt agagcccttt agagcacaaa acccagaaat ggttatctgt 
     841 caatacatgg atgacttgta tgtagcatct gatttagaaa taacacaaca tagagcaaaa 
     901 atagagaagc taagagaaca cctattgaaa tggggattta ctacaccaga caagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatag agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatctac ccagggatta aagtaaagca aatgtgtaaa 
    1141 ctccttaggg gaaccaaagc attaacagat gtagtaccac tgactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aatactaaaa gaaccagtac atggggtata ttatgaccca 
    1261 gcaaaagact taatagcaga aatacagaaa cagggraatg ac
//
last modified: Tue May 31 10:56 2022


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