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LOCUS HM635544 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 5701_050208 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635544
VERSION HM635544.1 GI:338227868
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="5701"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="5701_050208"
/country="Malawi"
/collection_date="02-May-2008"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90905.1"
/db_xref="GI:338227869"
/translation="PQITLWQRPLVTIIVGGQTKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALXEICXEMEREGKITKIGPENPYNTPVF
AIKKKGSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFRAQNPE
MVICQYMDDLYVASDLEITQHRAKIEKLREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQMCKLLRGTKALTDVV
PLTEEAELELAENREILKEPVHGVYYDPAKDLIAEIQKQGND"
BASE COUNT 517 a 209 c 279 g 291 t 6 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacaataa tcgtaggggg ccagacaaag
61 gaggctctct tagacacagg agcagatgac acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgag
181 caaatactta tagaaatttg tgggaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcaacttg gatgcacayt aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa magaaatctg traagaaatg
421 gagagggaag gaaaaattac aaaaattggg cctgaaaatc catataatac tccagtattt
481 gccataaaaa agaagggcag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagayttttg ggaagttcaa ttaggaatac cacacccagc agggttagaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 gaagatttta ggaaatatac tgcattcact atacctagta taaacaatga aacaccaggg
721 gttaggtatc agtataatgt gcttccacag ggatggaaag gatcaccatc aatattccar
781 agtagcatga caaaaatctt agagcccttt agagcacaaa acccagaaat ggttatctgt
841 caatacatgg atgacttgta tgtagcatct gatttagaaa taacacaaca tagagcaaaa
901 atagagaagc taagagaaca cctattgaaa tggggattta ctacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatag agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatctac ccagggatta aagtaaagca aatgtgtaaa
1141 ctccttaggg gaaccaaagc attaacagat gtagtaccac tgactgaaga agcagaatta
1201 gaattggcag agaacaggga aatactaaaa gaaccagtac atggggtata ttatgaccca
1261 gcaaaagact taatagcaga aatacagaaa cagggraatg ac
//
last modified: Tue May 31 10:56 2022