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LOCUS HM635501 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 4943_050508 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635501
VERSION HM635501.1 GI:338227782
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="4943"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="4943_050508"
/country="Malawi"
/collection_date="05-May-2008"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90862.1"
/db_xref="GI:338227783"
/translation="PQITLWQRPLVSIKVGGQVKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEDMEKEGKITKIGPDNPYNTPVF
AIKKKDSTEWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSINNGTPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFRWMGYELH
PDKWTVQPIVLPEKNSWTVNDIQKLVGKLNWASQIYPGIQVKQLCRLLRGAKALTDIV
ELTEEAELELAENREILKEPVHGVYYDPSKDLIAEVQKQGHG"
BASE COUNT 508 a 210 c 287 g 294 t 3 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg acaggtaaaa
61 gaggctctcc tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta ttaaagtaag acagtatgaa
181 caaatactta tagaaatytg tggaaaaaag gctataggta cagtattggt gggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcaactwg gatgcacact aaattttcca
301 attagtccca ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtc
361 aaacaatggc cattaacaga agaaaaaata aaagcattaa cagcaatttg tgaagacatg
421 gagaaggaag gaaaaattac aaaaattggg cctgacaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactgagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaacaaat cagtgacagt gctagatgtg ggggatgcat atttttcagt tcctttagat
661 gaaaacttca ggaaatatac tgcattcacc ataccaagta taaacaatgg aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatttt agagcccttt aggacaaaaa atccagacat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaagagt taagagaaca tttattgaaa tgggggctta ccacaccaga caagaaacat
961 cagaaagaac ccccatttcg ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatag tgytgccaga aaagaatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa attgggccag tcagatttac ccagggattc aagtaaagca gctgtgcaga
1141 ctgcttaggg gggccaaagc attaacagac atagtagaac taactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaacctgtgc atggagtata ttatgaccct
1261 tcaaaagatt tgatagctga agtacagaaa caggggcatg gc
//
last modified: Tue May 31 10:56 2022