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LOCUS	    HM635501		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 4943_050508 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635501
VERSION     HM635501.1 GI:338227782
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="4943"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="4943_050508"
		     /country="Malawi"
		     /collection_date="05-May-2008"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90862.1"
		     /db_xref="GI:338227783"
		     /translation="PQITLWQRPLVSIKVGGQVKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYEQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEDMEKEGKITKIGPDNPYNTPVF
		     AIKKKDSTEWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSINNGTPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFRWMGYELH
		     PDKWTVQPIVLPEKNSWTVNDIQKLVGKLNWASQIYPGIQVKQLCRLLRGAKALTDIV
		     ELTEEAELELAENREILKEPVHGVYYDPSKDLIAEVQKQGHG"
BASE COUNT	508 a	 210 c	  287 g    294 t      3 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg acaggtaaaa 
      61 gaggctctcc tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta ttaaagtaag acagtatgaa 
     181 caaatactta tagaaatytg tggaaaaaag gctataggta cagtattggt gggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcaactwg gatgcacact aaattttcca 
     301 attagtccca ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtc 
     361 aaacaatggc cattaacaga agaaaaaata aaagcattaa cagcaatttg tgaagacatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgacaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactgagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaacaaat cagtgacagt gctagatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaaacttca ggaaatatac tgcattcacc ataccaagta taaacaatgg aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatttt agagcccttt aggacaaaaa atccagacat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa 
     901 atagaagagt taagagaaca tttattgaaa tgggggctta ccacaccaga caagaaacat 
     961 cagaaagaac ccccatttcg ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatag tgytgccaga aaagaatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa attgggccag tcagatttac ccagggattc aagtaaagca gctgtgcaga 
    1141 ctgcttaggg gggccaaagc attaacagac atagtagaac taactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaacctgtgc atggagtata ttatgaccct 
    1261 tcaaaagatt tgatagctga agtacagaaa caggggcatg gc
//
last modified: Tue May 31 10:56 2022


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