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LOCUS	    HM635485		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 1596_011007 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635485
VERSION     HM635485.1 GI:338227750
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1596"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="1596_011007"
		     /country="Malawi"
		     /collection_date="10-Jan-2007"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90846.1"
		     /db_xref="GI:338227751"
		     /translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEDIALPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEXFRAQNPE
		     IVICQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKXQKEPPFXWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSRDLIAEIQKQGHD"
BASE COUNT	503 a	 207 c	  287 g    288 t     17 other
ORIGIN
       1 cctcagatca ctctttggca gcgacccctt gtctcaataa aagtaggggg acarataaar 
      61 gaggctctyt tagatacagg agcagatgat acagtattag aagacatagc tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaataccya tagaratttg tggaaaaaag gctataggta cagtattggt gggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg grtgcacact aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg accaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaggaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtatty 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggargttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt ccctttagat 
     661 gaaaacttca ggaagtatac tgcattcacc atacctagtg taaacaatga aacgccaggg 
     721 attagatacc aatataatgt acttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatytt agagyccttt agggcacaaa atccagaaat agtcatctgt 
     841 caatatatgg atgacttata tgtaggatct gatttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagggaaca tttattgaag tggggactta ccacaccaga caagaaayat 
     961 cagaaagaac ccccatttck wtggatgggg tatgarctcc atcctgacaa atggacagta 
    1021 cagcctatac agctaccaga aaaggaaagc tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttay gcagggatca aagtaaagca actttgtaga 
    1141 ctcctyaggg gggccaaagc actaacagac atagtaccac tgactgaaga agcagagtta 
    1201 gaattagcag agaataggga aattctaaaa gagccagtgc atggagtata ttatgatcca 
    1261 tcaagagayt taatagctga aatacagaaa cagggacatg at
//
last modified: Tue May 31 10:56 2022


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