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LOCUS HM635485 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 1596_011007 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635485
VERSION HM635485.1 GI:338227750
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1596"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="1596_011007"
/country="Malawi"
/collection_date="10-Jan-2007"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90846.1"
/db_xref="GI:338227751"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEDIALPGKWKP
KMIGGIGGFIKVRQYDQIPIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEXFRAQNPE
IVICQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKXQKEPPFXWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSRDLIAEIQKQGHD"
BASE COUNT 503 a 207 c 287 g 288 t 17 other
ORIGIN
1 cctcagatca ctctttggca gcgacccctt gtctcaataa aagtaggggg acarataaar
61 gaggctctyt tagatacagg agcagatgat acagtattag aagacatagc tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaataccya tagaratttg tggaaaaaag gctataggta cagtattggt gggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagcttg grtgcacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg accaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaggaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtatty
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggargttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt ccctttagat
661 gaaaacttca ggaagtatac tgcattcacc atacctagtg taaacaatga aacgccaggg
721 attagatacc aatataatgt acttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatytt agagyccttt agggcacaaa atccagaaat agtcatctgt
841 caatatatgg atgacttata tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagggaaca tttattgaag tggggactta ccacaccaga caagaaayat
961 cagaaagaac ccccatttck wtggatgggg tatgarctcc atcctgacaa atggacagta
1021 cagcctatac agctaccaga aaaggaaagc tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggcaag tcagatttay gcagggatca aagtaaagca actttgtaga
1141 ctcctyaggg gggccaaagc actaacagac atagtaccac tgactgaaga agcagagtta
1201 gaattagcag agaataggga aattctaaaa gagccagtgc atggagtata ttatgatcca
1261 tcaagagayt taatagctga aatacagaaa cagggacatg at
//
last modified: Tue May 31 10:56 2022